| BBMO temporal series |
True |
PRJEB48035 |
|
|
ENA |
Aquatic |
BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM), MARINHET_ICM_BBMO, BBMO surface nanoplankton metagenomes (ICM), Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
Ecology of Marine Microbes - LOGLAB |
| Nursing homes residents |
False |
|
|
|
|
Human |
Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group), Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
Microbioma, Alimentación y Salud (BEA) |
| Early Alzheimer patients |
False |
|
|
|
|
Human |
Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) |
Microbioma, Alimentación y Salud (BEA) |
| Arbuscular Mycorrhizal Fungi |
True |
|
|
|
|
Terrestrial |
Colección de Hongos Micorrícicos Arbusculares (EEZ) |
EEZ-Mycorrhizal Ecology Lab |
| Infant metagenomes and food contaminants |
False |
|
|
|
|
|
|
Microbioma, Alimentación y Salud (BEA) |
| Probiotabank |
False |
|
|
|
|
Human |
|
MicroHealth |
| MARINHET |
False |
|
|
|
|
Aquatic |
MARINHET_ICM, MARINHET_ICM_ATP09, MARINHET_ICM_BBMO, MARINHET_ICM_MIFASOL, MARINHET_ICM_Malaspina, MARINHET_ICM_Tara |
Ecology of Marine Microbes |
| IMpROVE |
False |
|
|
|
|
|
|
SabiO-Microbioomics Lab |
| Resource partitioning by Specialization in marine parasites. SMART |
False |
PRJNA891539
PRJNA891506 |
|
|
NCBI |
Aquatic |
|
Littoral Biological Processes - PBL |
| Distribution of chytrids infecting diatoms |
True |
PRJNA878459 |
|
|
NCBI |
Aquatic |
|
Littoral Biological Processes - PBL |
| Gut microbiome of copepods and cladocerans |
False |
PRJNA1267845 |
|
|
NCBI |
|
|
Littoral Biological Processes - PBL |
| Healthy individuals (adults) and nutritional interventions |
True |
PRJNA731070 |
|
<https://doi.org/10.1002/mnfr.201600620>
<https://doi.org/10.1021/jf402816r>
<https://doi.org/10.1021/jf4025135>
<https://doi.org/10.3390/microorganisms9071378> |
NCBI |
Human |
Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group), Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group), Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group), Microbial metabolism and intestinal barrier |
Microbioma, Alimentación y Salud (BEA) |
| Metabolic syndrome-Cardiovascular disease patients |
True |
PRJNA717111 |
|
<https://doi.org/10.1039/D1FO03942C> |
NCBI |
Human |
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) |
Microbioma, Alimentación y Salud (BEA) |
| SARS-CoV-2 patients |
True |
PRJNA1099539 |
|
<https://doi.org/10.3389/fcimb.2024.1494193> |
SRA |
Human |
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) |
Microbioma, Alimentación y Salud (BEA) |
| Fungal Microbiome of Plants |
False |
|
|
<https://doi.org/10.3389/fmicb.2018.03321>
<https://doi.org/10.1016/j.plantsci.2020.110762> |
|
Plants |
Fungal Microbiome of Festuca rubra subsp. pruinosa, Fungal Microbiome of Celtica gigantea |
Plant Microbiome Collection |
| Malaspina Expedition |
True |
PRJEB46336 |
|
Acinas SG et al., "Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.", Commun Biol, 2021 May 21;4(1):604 ([10.1038/s42003-021-02112-2](https://doi.org/10.1038/s42003-021-02112-2)) |
ENA, NCBI |
Aquatic |
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM), Malaspina diversity of deep microbial eukaryotes (ICM), Malaspina 16S rDNA size-fractions (ICM), Malaspina surface picoplankton 18S rRNA gene (ICM), Malaspina surface picoplankton 16S rRNA gene (ICM), Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM), Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM), Malaspina Expedition 2010 bathypelagic metagenomes (JGI), Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI), EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG), Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI), Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM), Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM), Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM), Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM), Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI), Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM), Malaspina Mesozooplankon (AZTI), Malaspina air metagenome raw sequence reads (KAUST), Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva), Malaspina Ketobacter Isolate (Shanghai Jiao Tong University), MARINHET_ICM_Malaspina |
Ecology of Marine Microbes - LOGLAB |
| Metabarcoding of benthic coastal sediment from the German Wadden Sea |
False |
PRJNA785761 |
|
https://doi.org/10.1080/09670262.2023.2279547 |
NCBI |
Aquatic |
|
Littoral Biological Processes - PBL |
| Understanding top-down control in coastal bloom-forming protist: opening the parasitic compartiment - COPAS |
True |
PRJNA630546 |
|
https://doi.org/10.1111/mec.15895 |
NCBI |
Aquatic |
|
Littoral Biological Processes - PBL |
| Ulcerative Colitis patiens |
True |
PRJNA749643 /
PRJNA749914 / |
|
https://doi.org/10.3390/cimb44040103
<https://doi.org/10.1002/mnfr.202101073> |
NCBI |
Human |
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group), Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
Microbioma, Alimentación y Salud (BEA) |
