| Adult Metagenome |
Human adult metagenomes (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human other |
bile samples of liver donors |
2019 |
|
Metagenomics (WGS) |
Metagenomics |
|
True |
SRR6877525 to SRR6877527 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| rrn_operon_ONT_CeD_1 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777818 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777818 |
| rrn_operon_ONT_CeD_2 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777815 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777815 |
| rrn_operon_ONT_CeD_3 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777816 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777816 |
| rrn_operon_ONT_CeD_4 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777817 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777817 |
| rrn_operon_ONT_CeD_5 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777819 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777819 |
| rrn_operon_ONT_CeD_6 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777820 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777820 |
| Malaspina_metatranscriptome_29 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:West of El Salvador\; Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687111 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_46 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:West of El Salvador\; Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687588 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_28 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:West of Cabo San Lucas\; Mexico\; North Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687112 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_45 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:Southwest of Acapulco\; Mexico\; North Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687569 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_27 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:South Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687577 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_43 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:South Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687493 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_26 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:South of Fiji\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687576 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_42 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:South of Fiji\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687587 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_44 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:North Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687109 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_32 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606931 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_34 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606930 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_35 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606929 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_36 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606928 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_37 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606927 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_38 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606926 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_39 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Pacific Subtropical Gyre Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606925 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_39 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Australian basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025351 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_40 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Australian basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025352 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_41 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Australian basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025353 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_42 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Australian basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025355 |
|
|
|
|
|
|
| Malaspina_16S_Bathypelagic_20 |
Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Australian basin |
Marine water |
Opean ocean salt water |
|
|
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA9009562 |
|
|
|
|
|
|
| Malaspina_16S_Bathypelagic_21 |
Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: South Australian basin |
Marine water |
Opean ocean salt water |
|
|
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA9009563 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_29 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific Equatorial Divergence Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606934 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_30 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific Equatorial Divergence Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606933 |
|
|
|
|
|
|
| Malaspina_aerobic_bcateria_31 |
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific Equatorial Divergence Province |
Marine water |
Opean ocean salt water |
2011 |
|
|
metaB |
|
True |
SAMN19606932 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_47 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025359 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_48 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025360 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_49 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025361 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_50 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025362 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_51 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025363 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_52 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025366 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_53 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025364 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_54 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025365 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_55 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025367 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_56 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025368 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_57 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025369 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_58 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025370 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_59 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025371 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_60 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025372 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_61 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025373 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_62 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025374 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_63 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025375 |
|
|
|
|
|
|
| Malaspina_18S_Bethyelagic_64 |
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean: Pacific basin |
Marine water |
Opean ocean salt water |
|
|
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA9025376 |
|
|
|
|
|
|
