| Malaspina_metatranscriptome_27 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:South Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687577 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_43 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:South Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687493 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_45 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:Southwest of Acapulco\; Mexico\; North Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687569 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_28 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:West of Cabo San Lucas\; Mexico\; North Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687112 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_29 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:West of El Salvador\; Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687111 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_46 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean:West of El Salvador\; Pacific Ocean |
Marine water |
Opean ocean salt water |
|
|
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN07687588 |
|
|
|
|
|
|
| rrn_operon_ONT_CeD_1 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777818 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777818 |
| rrn_operon_ONT_CeD_2 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777815 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777815 |
| rrn_operon_ONT_CeD_3 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777816 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777816 |
| rrn_operon_ONT_CeD_4 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777817 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777817 |
| rrn_operon_ONT_CeD_5 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777819 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777819 |
| rrn_operon_ONT_CeD_6 |
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Portugal |
Human gut |
Human feces, coeliac disease patients and first-degree non-coeliac relatives |
2022 |
2022-04-01 |
Other |
Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION |
|
True |
ERR12777820 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR12777820 |
| Children Metataxonomies (6 months) |
Healthy children metataxonomies (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human gut |
child feces |
2024 |
|
|
Metataxonomics |
|
True |
SAMN38115097 to SAMN38115110 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| Children Metataxonomies (4-14 years) |
Healthy children metataxonomies (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human gut |
child feces |
2021 |
|
|
Metataxonomics |
|
True |
SAMN40261256 - SAMN40261275 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| Children Metataxonomies (<2 years) |
Healthy children metataxonomies (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human gut |
child feces |
2021 |
|
|
Metataxonomics |
|
True |
SAMN32161911 - SAMN32161919 and SAMN32320403 - SAMN32320411 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| Children Metataxonomies (6 months) |
Healthy children metataxonomies (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human gut |
child feces |
2023 |
|
|
Metataxonomics |
|
True |
SAMN34565804 to SAMN34565827 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| Children Metataxonomies (1 year) |
Healthy children metataxonomies (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human gut |
child feces |
2024 |
|
|
Metataxonomics |
|
True |
SAMN41921760 to SAMN41921783 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| Adult Metagenome |
Human adult metagenomes (IPLA) |
|
MicroHealth |
Human |
Principality of Asturias |
Human other |
bile samples of liver donors |
2019 |
|
Metagenomics (WGS) |
Metagenomics |
|
True |
SRR6877525 to SRR6877527 |
|
|
|
|
|
https://www.ncbi.nlm.nih.gov/sra |
| Malespina_metagenomes_5 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2026-01-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422169 |
|
|
|
|
|
|
| Malespina_metagenomes_10 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-02-01 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422147 |
|
|
|
|
|
|
| Malespina_metagenomes_11 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-01-01 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422143 |
|
|
|
|
|
|
| Malespina_metagenomes_20 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-01-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422117 |
|
|
|
|
|
|
| Malespina_metagenomes_33 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-02-01 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422111 |
|
|
|
|
|
|
| Malespina_metagenomes_34 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-01-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422110 |
|
|
|
|
|
|
| Malespina_metagenomes_53 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2026-01-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422194 |
|
|
|
|
|
|
| Malespina_metagenomes_55 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-01-01 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422191 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_535 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2012-07-09 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639779 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_536 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2012-07-09 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640066 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_537 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2022-07-09 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639781 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_538 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2022-07-09 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640068 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_539 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-08-04 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639782 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_540 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-08-04 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640069 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_541 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-05-08 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639783 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_542 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-05-08 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640070 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_543 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-08-05 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639785 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_544 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-08-05 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640072 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_757 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2012-07-09 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640208 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_758 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2022-07-09 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640210 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_759 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
South Atlantic Ocean |
Sediment |
deep marine sediment |
2009 |
2009-08-04 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640211 |
|
|
|
|
|
|
| Malespina_metagenomes_4 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-03-05 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05421561 |
|
|
|
|
|
|
| Malespina_metagenomes_7 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-03-05 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422158 |
|
|
|
|
|
|
| Malespina_metagenomes_9 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-03-08 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422148 |
|
|
|
|
|
|
| Malespina_metagenomes_19 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-03-02 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05421707 |
|
|
|
|
|
|
| Malespina_metagenomes_31 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-03-02 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422115 |
|
|
|
|
|
|
| Malespina_metagenomes_48 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2011-03-08 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422108 |
|
|
|
|
|
|
| Malespina_metagenomes_2 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Cape Verde\; Atlantic Ocean |
Marine water |
Opean ocean salt water |
2010 |
2028-12-10 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05421660 |
|
|
|
|
|
|
| Malespina_metagenomes_49 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Cape Verde\; Atlantic Ocean |
Marine water |
Opean ocean salt water |
2010 |
2028-12-10 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422107 |
|
|
|
|
|
|
| Malespina_metagenomes_3 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Eden\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2027-03-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422170 |
|
|
|
|
|
|
| Malespina_metagenomes_1 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Fiji\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422171 |
|
|
|
|
|
|
| Malespina_metagenomes_14 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Fiji\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422137 |
|
|
|
|
|
|
