Contacto
CSIC Microbioma Hub

Datos Γ“micos

Limpiar
Nombre ColecciΓ³n Proyecto Grupo Bioma LocalizaciΓ³n Origen Fuente especΓ­fica AΓ±o Fecha Tipo Γ³mico Especificaciones Γ³micas NΒΊ de muestras PΓΊblico Accession ID Completitud ContaminaciΓ³n Contenido GC N50 TaxonomΓ­a Enlace
V3V4_16S_mousePhasco_21 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055708 https://www.ebi.ac.uk/ena/browser/view/ERR12055708
V3V4_16S_mousePhasco_22 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055721 https://www.ebi.ac.uk/ena/browser/view/ERR12055721
V3V4_16S_mousePhasco_23 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055699 https://www.ebi.ac.uk/ena/browser/view/ERR12055699
V3V4_16S_mousePhasco_24 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055703 https://www.ebi.ac.uk/ena/browser/view/ERR12055703
V3V4_16S_mousePhasco_25 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055713 https://www.ebi.ac.uk/ena/browser/view/ERR12055713
V3V4_16S_mousePhasco_26 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055714 https://www.ebi.ac.uk/ena/browser/view/ERR12055714
V3V4_16S_mousePhasco_27 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055717 https://www.ebi.ac.uk/ena/browser/view/ERR12055717
V3V4_16S_mousePhasco_28 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055719 https://www.ebi.ac.uk/ena/browser/view/ERR12055719
V3V4_16S_mousePhasco_29 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055697 https://www.ebi.ac.uk/ena/browser/view/ERR12055697
BL_200130 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2030-01-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099111
BL_200211 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2011-02-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099112
BL_200310 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2010-03-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099113
BL_200512 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2012-05-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099115
BL_200519 BBMO temporal series (BBMO_ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2019-05-20 Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene True
BL_200526 BBMO temporal series (BBMO_ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2026-05-20 Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene True
BL_200602 BBMO temporal series (BBMO_ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2020-06-02 Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene False
BL_200609 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2020-06-09 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG False SAMEA14099128
BL_200623 BBMO temporal series (BBMO_ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2023-06-20 Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene False
BL_200707 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2020-07-07 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099131
BL_200721 BBMO temporal series (BBMO_ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2021-07-20 Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene False
BL_200804 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2020-08-04 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099132
BL_200915 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2015-09-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG False SAMEA14099133
BL_201013 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2013-10-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099135
BL_201110 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2010-11-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099136
BL_201215 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2020 2015-12-20 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099141
Dvex_Alab1 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal USA: Alaska Animal other Didemnum vexillum, tunic tissue, Alaska 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239548 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Alab2 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal USA: Alaska Animal other Didemnum vexillum, tunic tissue, Alaska 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239549 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Alab3 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal USA: Alaska Animal other Didemnum vexillum, tunic tissue, Alaska 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239550 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Alab4 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal USA: Alaska Animal other Didemnum vexillum, tunic tissue, Alaska 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239551 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Alab5 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal USA: Alaska Animal other Didemnum vexillum, tunic tissue, Alaska 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239552 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Aomb1 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Japan: Aomori Animal other Didemnum vexillum, tunic tissue, Aomori 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239519 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Aomb2 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Japan: Aomori Animal other Didemnum vexillum, tunic tissue, Aomori 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239520 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Aomb3 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Japan: Aomori Animal other Didemnum vexillum, tunic tissue, Aomori 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239521 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Aomb4 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Japan: Aomori Animal other Didemnum vexillum, tunic tissue, Aomori 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239522 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Aomb5 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Japan: Aomori Animal other Didemnum vexillum, tunic tissue, Aomori 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239523 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_B1 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Marine water Seawater surface (1L), Ebro Delta (Spain) 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239573 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_B2 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Marine water Seawater surface (1L), Ebro Delta (Spain) 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239574 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_B3 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Marine water Seawater surface (1L), Ebro Delta (Spain) 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239575 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Breb1 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal France: Brest Animal other Didemnum vexillum, tunic tissue, Brest 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239509 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Breb2 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal France: Brest Animal other Didemnum vexillum, tunic tissue, Brest 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239510 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Breb3 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal France: Brest Animal other Didemnum vexillum, tunic tissue, Brest 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239511 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Breb4 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal France: Brest Animal other Didemnum vexillum, tunic tissue, Brest 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239512 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Breb5 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal France: Brest Animal other Didemnum vexillum, tunic tissue, Brest 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239513 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Delb1 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Animal other Didemnum vexillum, tunic tissue, Ebro Delta 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239538 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Delb2 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Animal other Didemnum vexillum, tunic tissue, Ebro Delta 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239539 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Delb3 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Animal other Didemnum vexillum, tunic tissue, Ebro Delta 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239540 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Delb4 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Animal other Didemnum vexillum, tunic tissue, Ebro Delta 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239541 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Delb5 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal Spain: Ebro Delta Animal other Didemnum vexillum, tunic tissue, Ebro Delta 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239542 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Nzb1 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal New Zealand: Nelson Animal other Didemnum vexillum, tunic tissue, Nelson 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239533 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/
Dvex_Nzb2 Didemnum vexillum microbiome - global survey (CEAB) Molecular ecology of marine benthos Animal New Zealand: Nelson Animal other Didemnum vexillum, tunic tissue, Nelson 2020 16S rRNA gene V4 region, F515/R806; Illumina MiSeq; SINGLE-end 500bp True SAMN14239534 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA608680/