| V3V4_16S_mouseHoldemanella_17 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159958 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159958 |
| V3V4_16S_mouseHoldemanella_18 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159959 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159959 |
| V3V4_16S_mouseHoldemanella_19 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159960 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159960 |
| V3V4_16S_mouseHoldemanella_20 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159961 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159961 |
| V3V4_16S_mouseHoldemanella_21 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159962 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159962 |
| V3V4_16S_mouseHoldemanella_22 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159963 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159963 |
| V3V4_16S_mouseHoldemanella_23 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159964 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159964 |
| V3V4_16S_mouseHoldemanella_24 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159965 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159965 |
| V3V4_16S_mouseHoldemanella_25 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159966 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159966 |
| V3V4_16S_mouseHoldemanella_26 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159967 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159967 |
| V3V4_16S_mouseHoldemanella_27 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159968 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159968 |
| V3V4_16S_mouseHoldemanella_28 |
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Microbial Ecology, Nutrition and Health |
Animal |
Spain |
Animal gut |
Mouse feces, Holdemanella biformis oral administration, glucose tolerance/GLP-1 signalling |
2018 |
2018-06-01 |
16S rRNA gene |
V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq |
|
True |
ERR4159969 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR4159969 |
| BL_120518 |
BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2012 |
2018-05-12 |
Metagenomics (WGS), 18S rRNA gene |
WGS (shotgun), 18S rRNA gene, metaB |
|
True |
SAMEA104443900;SAMEA14099126 |
|
|
|
|
|
|
| BL_180508 |
BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2018 |
2018-05-08 |
Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) |
WGS (shotgun), metaG, metaT, SAG |
|
True |
SAMEA14099125 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_40 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432477 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_40 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655263 |
|
|
|
|
|
|
| Malespina_metagenomes_1 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Fiji\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422171 |
|
|
|
|
|
|
| Malespina_metagenomes_14 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Fiji\; South Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422137 |
|
|
|
|
|
|
| Malespina_pyrotags_20 |
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-04-11 |
|
metaB |
|
True |
SAMN05425661 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_232 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639595 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_233 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639880 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_234 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639596 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_235 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639881 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_236 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639882 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_237 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639598 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_238 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639883 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_239 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639599 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_240 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639884 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_241 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639600 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_242 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639885 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_624 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640246 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_625 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640147 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_626 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640247 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_627 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640148 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_628 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-03-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640149 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_10 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-03-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432465 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_10 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2018-03-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655251 |
|
|
|
|
|
|
| BL_100318 |
BBMO temporal series (BBMO_ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2010 |
2018-03-10 |
Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene |
metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene |
|
False |
|
|
|
|
|
|
|
| BL_180306 |
BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2018 |
2018-03-06 |
Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) |
WGS (shotgun), metaG, metaT, SAG |
|
True |
SAMEA14099123 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_13 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639817 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_14 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640105 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_15 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639826 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_16 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640114 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_17 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639832 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_18 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640120 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_19 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639553 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_20 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639838 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_21 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639563 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_22 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639848 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_23 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2018-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639570 |
|
|
|
|
|
|
