| Malaspina_16S_rDNA_19 |
Malaspina 16S rDNA size-fractions (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-03-11 |
16S rRNA gene |
16S rDNA gene, metaB |
|
True |
SAMEA4719678 |
|
|
|
|
|
|
| Malaspina_16S_rDNA_20 |
Malaspina 16S rDNA size-fractions (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-03-11 |
16S rRNA gene |
16S rDNA gene, metaB |
|
True |
SAMEA4719679 |
|
|
|
|
|
|
| Malespina_metagenomes_39 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
South of Port of Lincoln\; Great Australian Bight\; South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-03-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422152 |
|
|
|
|
|
|
| Malespina_pyrotags_16 |
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-03-11 |
|
metaB |
|
True |
SAMN05425678 |
|
|
|
|
|
|
| Malespina_pyrotags_17 |
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-03-11 |
|
metaB |
|
True |
SAMN05425659 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_10 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-03-11 |
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN06268829 |
|
|
|
|
|
|
| Malaspina_air_51 |
Malaspina air metagenome raw sequence reads (KAUST) |
Malaspina Expedition |
|
Air |
|
Air |
air over the ocean |
2011 |
2023-03-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN04904007 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_55 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432481 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_55 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-04-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655267 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_56 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
|
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38048037 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_57 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
|
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38048036 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_58 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
|
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38048035 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_81 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
|
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38048035 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_163 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
|
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38048037 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_164 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
|
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38048036 |
|
|
|
|
|
|
| Malaspina_air_60 |
Malaspina air metagenome raw sequence reads (KAUST) |
Malaspina Expedition |
|
Air |
|
Air |
air over the ocean |
2011 |
2023-04-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN04904015 |
|
|
|
|
|
|
| BL_010523 |
BBMO temporal series (BBMO_ICM) |
BBMO temporal series |
EMM - LOGLAB (ICM) |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2001 |
2023-05-01 |
Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene |
metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene |
|
False |
|
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_152 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422561 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_153 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422560 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_154 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422559 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_155 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422558 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_156 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422557 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_157 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422556 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_158 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422555 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_159 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422650 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_160 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422649 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_161 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422648 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_162 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422647 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_163 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422646 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_164 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422645 |
|
|
|
|
|
|
| Malaspina_18S(V4)_rRNA_165 |
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, 18S rDNA gene, metaB |
|
True |
SAMEA104422644 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_119 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432500 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_119 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Pacific Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-05-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655286 |
|
|
|
|
|
|
| Malaspina_air_96 |
Malaspina air metagenome raw sequence reads (KAUST) |
Malaspina Expedition |
|
Air |
|
Air |
air over the ocean |
2011 |
2023-05-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN04904048 |
|
|
|
|
|
|
| V3V4_16S_Wilson_49 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978933 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978933 |
| V3V4_16S_Wilson_50 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978934 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978934 |
| V3V4_16S_Wilson_51 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978935 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978935 |
| V3V4_16S_Wilson_52 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978936 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978936 |
| V3V4_16S_Wilson_53 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978937 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978937 |
| V3V4_16S_Wilson_54 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978938 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978938 |
| V3V4_16S_Wilson_55 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978939 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978939 |
| V3V4_16S_Wilson_56 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978940 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978940 |
| V3V4_16S_Wilson_57 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978941 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978941 |
| V3V4_16S_Wilson_58 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978942 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978942 |
| V3V4_16S_Wilson_59 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978943 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978943 |
| V3V4_16S_Wilson_60 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978944 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978944 |
| Malaspina_surf_pico_18S_87 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-06-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432516 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_87 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
EMM - LOGLAB (ICM) |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-06-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655302 |
|
|
|
|
|
|
| Malaspina_air_84 |
Malaspina air metagenome raw sequence reads (KAUST) |
Malaspina Expedition |
|
Air |
|
Air |
air over the ocean |
2011 |
2023-06-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN04904037 |
|
|
|
|
|
|
| BL_200623 |
BBMO temporal series (BBMO_ICM) |
BBMO temporal series |
EMM - LOGLAB (ICM) |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2020 |
2023-06-20 |
Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene |
metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene |
|
False |
|
|
|
|
|
|
|
