Contacto
CSIC Microbioma Hub

Datos Γ“micos

Limpiar
Nombre ColecciΓ³n Proyecto Grupo Bioma LocalizaciΓ³n Origen Fuente especΓ­fica AΓ±o Fecha Tipo Γ³mico Especificaciones Γ³micas NΒΊ de muestras PΓΊblico Accession ID Completitud ContaminaciΓ³n Contenido GC N50 TaxonomΓ­a Enlace
V3V4_16S_mousePhasco_14 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055715 https://www.ebi.ac.uk/ena/browser/view/ERR12055715
V3V4_16S_mousePhasco_15 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055716 https://www.ebi.ac.uk/ena/browser/view/ERR12055716
V3V4_16S_mousePhasco_16 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055718 https://www.ebi.ac.uk/ena/browser/view/ERR12055718
V3V4_16S_mousePhasco_17 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055720 https://www.ebi.ac.uk/ena/browser/view/ERR12055720
V3V4_16S_mousePhasco_18 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055722 https://www.ebi.ac.uk/ena/browser/view/ERR12055722
V3V4_16S_mousePhasco_19 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055723 https://www.ebi.ac.uk/ena/browser/view/ERR12055723
V3V4_16S_mousePhasco_20 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055724 https://www.ebi.ac.uk/ena/browser/view/ERR12055724
V3V4_16S_mousePhasco_21 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055708 https://www.ebi.ac.uk/ena/browser/view/ERR12055708
V3V4_16S_mousePhasco_22 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055721 https://www.ebi.ac.uk/ena/browser/view/ERR12055721
V3V4_16S_mousePhasco_23 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055699 https://www.ebi.ac.uk/ena/browser/view/ERR12055699
V3V4_16S_mousePhasco_24 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055703 https://www.ebi.ac.uk/ena/browser/view/ERR12055703
V3V4_16S_mousePhasco_25 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055713 https://www.ebi.ac.uk/ena/browser/view/ERR12055713
V3V4_16S_mousePhasco_26 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055714 https://www.ebi.ac.uk/ena/browser/view/ERR12055714
V3V4_16S_mousePhasco_27 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055717 https://www.ebi.ac.uk/ena/browser/view/ERR12055717
V3V4_16S_mousePhasco_28 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055719 https://www.ebi.ac.uk/ena/browser/view/ERR12055719
V3V4_16S_mousePhasco_29 V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Microbial Ecology, Nutrition and Health Animal Spain Animal gut Mouse feces, obese mice on high-fat/high-sugar diet + oral Phascolarctobacterium faecium DSM 32890 2019 2019-11-11 16S rRNA gene V3-V4 region amplicon sequencing, primers 341F/805R, Illumina MiSeq True ERR12055697 https://www.ebi.ac.uk/ena/browser/view/ERR12055697
BL_191203 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2019 2019-12-03 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099110
Malaspina_surf_pico_18S_107 Malaspina surface picoplankton 18S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Atlantic Ocean Marine water Opean ocean salt water 2010 2019-12-10 18S rRNA gene 18S rRNA gene, metaB True SAMEA104432409
Malaspina_surf_pico_16S_107 Malaspina surface picoplankton 16S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Atlantic Ocean Marine water Opean ocean salt water 2010 2019-12-10 16S rRNA gene 16S rRNA gene, metaB True SAMEA104655195
BL_111219 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO surface nanoplankton metagenomes (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2011 2019-12-11 Metagenomics (WGS), 16S rRNA gene, 18S rRNA gene, Metatranscriptomics WGS (shotgun), 16S rRNA gene, metaB, 18S rRNA gene, metaG, metaT True SAMEA6939307;SAMEA6939306;SAMEA104443895;SAMEA14099109
Eukariotyk_diversity_deepoceap_243 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639601
Eukariotyk_diversity_deepoceap_244 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639886
Eukariotyk_diversity_deepoceap_245 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639602
Eukariotyk_diversity_deepoceap_246 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639604
Eukariotyk_diversity_deepoceap_247 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639605
Eukariotyk_diversity_deepoceap_248 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639890
Eukariotyk_diversity_deepoceap_249 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639606
Eukariotyk_diversity_deepoceap_250 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639891
Eukariotyk_diversity_deepoceap_251 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639607
Eukariotyk_diversity_deepoceap_252 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639892
Eukariotyk_diversity_deepoceap_629 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640248
Eukariotyk_diversity_deepoceap_630 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640250
Eukariotyk_diversity_deepoceap_631 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640150
Eukariotyk_diversity_deepoceap_632 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640251
Eukariotyk_diversity_deepoceap_633 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic Mid Atlantic Ocean Sediment deep marine sediment 2014 2019-12-14 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640252
BL_050120 BBMO temporal series (BBMO_ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2005 2020-01-05 16S rRNA gene, 18S rRNA gene 16S rRNA gene, metaB, 18S rRNA gene True SAMEA6939143;SAMEA6939142;SAMEA104443701;SAMEA104443702;SAMEA104443700
BL_100120 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO surface nanoplankton metagenomes (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2010 2020-01-10 Metagenomics (WGS), 16S rRNA gene, 18S rRNA gene WGS (shotgun), 16S rRNA gene, metaB, 18S rRNA gene, metaG True SAMEA6939261;SAMEA6939260;SAMEA104443865;SAMEA104443866;SAMEA104443864;SAMEA14099035
Malaspina_surf_pico_18S_48 Malaspina surface picoplankton 18S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Atlantic Ocean Marine water Opean ocean salt water 2011 2020-01-11 18S rRNA gene 18S rRNA gene, metaB True SAMEA104432428
Malaspina_surf_pico_16S_48 Malaspina surface picoplankton 16S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Atlantic Ocean Marine water Opean ocean salt water 2011 2020-01-11 16S rRNA gene 16S rRNA gene, metaB True SAMEA104655214
Malaspina_air_10 Malaspina air metagenome raw sequence reads (KAUST) Malaspina Expedition Air Air air over the ocean 2011 2020-01-11 18S rRNA gene 18S rRNA gene, metaB True SAMN04903970
Stye_plic_SAMN37904289 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, gill tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904289 5299.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904290 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, tunic tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904290 5313.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904291 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, gill tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904291 5203.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904292 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, tunic tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904292 5284.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904293 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, gill tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904293 529.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904294 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, tunic tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904294 5228.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904295 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, gill tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904295 5077.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904296 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, tunic tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904296 5273.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904297 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, gill tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904297 5257.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/
Stye_plic_SAMN37904298 Styela plicata microbiome - spatio-temporal dynamics (CEAB) Molecular ecology of marine benthos Animal Spain:Vilanova Animal other Styela plicata, tunic tissue, Spain:Vilanova 2020 2020-01-15 16S rRNA gene V4 region, F515/R806; Illumina NovaSeq 6000; paired-end 150bp True SAMN37904298 5199.000 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1030313/