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Nombre Colección Proyecto Grupo Bioma Localización Origen Fuente específica Año Fecha Tipo ómico Especificaciones ómicas Nº de muestras Público Accession ID Completitud Contaminación Contenido GC N50 Taxonomía Enlace
Malaspina_air_28 Malaspina air metagenome raw sequence reads (KAUST) Malaspina Expedition Air Air air over the ocean 2011 2017-02-11 18S rRNA gene 18S rRNA gene, metaB True SAMN04903986
Eukariotyk_diversity_deepoceap_1 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639552
Eukariotyk_diversity_deepoceap_2 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639837
Eukariotyk_diversity_deepoceap_3 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639635
Eukariotyk_diversity_deepoceap_4 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639921
Eukariotyk_diversity_deepoceap_5 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639743
Eukariotyk_diversity_deepoceap_6 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640027
Eukariotyk_diversity_deepoceap_7 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639788
Eukariotyk_diversity_deepoceap_8 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640075
Eukariotyk_diversity_deepoceap_9 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639798
Eukariotyk_diversity_deepoceap_10 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640086
Eukariotyk_diversity_deepoceap_11 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639808
Eukariotyk_diversity_deepoceap_12 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640096
Eukariotyk_diversity_deepoceap_545 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640203
Eukariotyk_diversity_deepoceap_546 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640220
Eukariotyk_diversity_deepoceap_547 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-02-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640225
BL_090317 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO surface nanoplankton metagenomes (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2009 2017-03-09 Metagenomics (WGS), 16S rRNA gene, 18S rRNA gene WGS (shotgun), 16S rRNA gene, metaB, 18S rRNA gene, metaG True SAMEA6939241;SAMEA6939240;SAMEA104443835;SAMEA104443836;SAMEA104443834;SAMEA14099009
Eukariotyk_diversity_deepoceap_220 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639588
Eukariotyk_diversity_deepoceap_221 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639873
Eukariotyk_diversity_deepoceap_222 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639589
Eukariotyk_diversity_deepoceap_223 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639874
Eukariotyk_diversity_deepoceap_224 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639590
Eukariotyk_diversity_deepoceap_225 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639875
Eukariotyk_diversity_deepoceap_226 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639591
Eukariotyk_diversity_deepoceap_227 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639876
Eukariotyk_diversity_deepoceap_228 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639593
Eukariotyk_diversity_deepoceap_229 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639878
Eukariotyk_diversity_deepoceap_230 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639594
Eukariotyk_diversity_deepoceap_231 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10639879
Eukariotyk_diversity_deepoceap_619 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640141
Eukariotyk_diversity_deepoceap_620 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640142
Eukariotyk_diversity_deepoceap_621 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640143
Eukariotyk_diversity_deepoceap_622 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640145
Eukariotyk_diversity_deepoceap_623 Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Malaspina Expedition Aquatic North Pacific Ocean Sediment deep marine sediment 2015 2017-03-15 18S rRNA gene 18S rRNA gene, metaB True SAMEA10640146
BL_170404 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2017 2017-04-04 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099106
rrn_operon_ONT_FMT_1 rrn operon ONT sequencing from human feces - FMT (IATA) Microbial Ecology, Nutrition and Health Human Netherlands Human gut Human feces, faecal microbiota transplantation (FMT) donors/recipients, metabolic syndrome subjects 2017 2017-04-10 Other Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION True ERR3504838 https://www.ebi.ac.uk/ena/browser/view/ERR3504838
rrn_operon_ONT_FMT_2 rrn operon ONT sequencing from human feces - FMT (IATA) Microbial Ecology, Nutrition and Health Human Netherlands Human gut Human feces, faecal microbiota transplantation (FMT) donors/recipients, metabolic syndrome subjects 2017 2017-04-10 Other Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION True ERR3504836 https://www.ebi.ac.uk/ena/browser/view/ERR3504836
rrn_operon_ONT_FMT_3 rrn operon ONT sequencing from human feces - FMT (IATA) Microbial Ecology, Nutrition and Health Human Netherlands Human gut Human feces, faecal microbiota transplantation (FMT) donors/recipients, metabolic syndrome subjects 2017 2017-04-10 Other Full-length rrn operon (16S-ITS-23S) amplicon sequencing, Oxford Nanopore MinION True ERR3504837 https://www.ebi.ac.uk/ena/browser/view/ERR3504837
Malaspina_surf_pico_18S_13 Malaspina surface picoplankton 18S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Pacific Ocean Marine water Opean ocean salt water 2011 2017-04-11 18S rRNA gene 18S rRNA gene, metaB True SAMEA104432476
Malaspina_surf_pico_16S_13 Malaspina surface picoplankton 16S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Pacific Ocean Marine water Opean ocean salt water 2011 2017-04-11 16S rRNA gene 16S rRNA gene, metaB True SAMEA104655262
BL_130417 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO surface nanoplankton metagenomes (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2013 2017-04-13 Metagenomics (WGS), 16S rRNA gene, 18S rRNA gene, Metatranscriptomics WGS (shotgun), 16S rRNA gene, metaB, 18S rRNA gene, metaG, metaT True SAMEA6939339;SAMEA121367907;SAMEA121367948
BL_170509 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2017 2017-05-09 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG True SAMEA14099114
BL_110517 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO surface nanoplankton metagenomes (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2011 2017-05-11 Metagenomics (WGS), 16S rRNA gene, 18S rRNA gene WGS (shotgun), 16S rRNA gene, metaB, 18S rRNA gene, metaG True SAMEA6939293;SAMEA6939292;SAMEA104443888;SAMEA14099087
Malaspina_surf_pico_18S_97 Malaspina surface picoplankton 18S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Pacific Ocean Marine water Opean ocean salt water 2011 2017-05-11 18S rRNA gene 18S rRNA gene, metaB True SAMEA104432495
Malaspina_surf_pico_16S_97 Malaspina surface picoplankton 16S rRNA gene (ICM) Malaspina Expedition Ecology of Marine Microbes - LOGLAB Aquatic Pacific Ocean Marine water Opean ocean salt water 2011 2017-05-11 16S rRNA gene 16S rRNA gene, metaB True SAMEA104655281
V3V4_16S_UCI_174 V3-V4 16S amplicons from human feces - UCI patients (IATA) Microbial Ecology, Nutrition and Health Human Colombia Human gut Human feces, ICU (critically ill) patients with and without sepsis 2017 2017-06-05 16S rRNA gene V3-V4 region amplicon sequencing, Illumina MiSeq True ERR3416797 https://www.ebi.ac.uk/ena/browser/view/ERR3416797
V3V4_16S_UCI_175 V3-V4 16S amplicons from human feces - UCI patients (IATA) Microbial Ecology, Nutrition and Health Human Colombia Human gut Human feces, ICU (critically ill) patients with and without sepsis 2017 2017-06-05 16S rRNA gene V3-V4 region amplicon sequencing, Illumina MiSeq True ERR3416798 https://www.ebi.ac.uk/ena/browser/view/ERR3416798
BL_170606 BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM) BBMO temporal series Ecology of Marine Microbes - LOGLAB Aquatic Western Mediterranean Sea (Blanes Bay) Marine water coastal sea water 2017 2017-06-06 Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) WGS (shotgun), metaG, metaT, SAG False SAMEA14099117
V3V4_16S_UCI_39 V3-V4 16S amplicons from human feces - UCI patients (IATA) Microbial Ecology, Nutrition and Health Human Colombia Human gut Human feces, ICU (critically ill) patients with and without sepsis 2017 2017-06-06 16S rRNA gene V3-V4 region amplicon sequencing, Illumina MiSeq True ERR3416662 https://www.ebi.ac.uk/ena/browser/view/ERR3416662
V3V4_16S_UCI_40 V3-V4 16S amplicons from human feces - UCI patients (IATA) Microbial Ecology, Nutrition and Health Human Colombia Human gut Human feces, ICU (critically ill) patients with and without sepsis 2017 2017-06-06 16S rRNA gene V3-V4 region amplicon sequencing, Illumina MiSeq True ERR3416663 https://www.ebi.ac.uk/ena/browser/view/ERR3416663