| Eukariotyk_diversity_deepoceap_74 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2024-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639790 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_75 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2024-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640077 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_575 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2024-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640213 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_576 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2024-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640214 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_577 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2024-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640215 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_578 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2015 |
2024-02-15 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640216 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_29 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-02-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432448 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_29 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-02-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655234 |
|
|
|
|
|
|
| Malespina_metagenomes_32 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
East of Madagascar\; South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-02-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05421913 |
|
|
|
|
|
|
| Malespina_metagenomes_43 |
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
Malaspina Expedition |
|
Aquatic |
East of Madagascar\; South Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-02-11 |
Metagenomics (WGS) |
WGS (shotgun) |
|
True |
SAMN05422122 |
|
|
|
|
|
|
| Malaspina_metatranscriptome_6 |
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
Malaspina Expedition |
|
Aquatic |
Indian Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-02-11 |
Metatranscriptomics, RT-PCR |
Transcriptome, RT_PCR |
|
True |
SAMN06268825 |
|
|
|
|
|
|
| BL_170124 |
BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO SAGs (ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2017 |
2024-01-17 |
Metagenomics (WGS), Metatranscriptomics, Single-cell genome (SAG) |
WGS (shotgun), metaG, metaT, SAG |
|
True |
SAMEA14099105 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_45 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-01-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432431 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_45 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-01-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655217 |
|
|
|
|
|
|
| Malespina_pyrotags_41 |
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2024-01-11 |
|
metaB |
|
True |
SAMN05425649 |
|
|
|
|
|
|
| Malaspina_air_14 |
Malaspina air metagenome raw sequence reads (KAUST) |
Malaspina Expedition |
|
Air |
|
Air |
air over the ocean |
2011 |
2024-01-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN04903973 |
|
|
|
|
|
|
| Malaspina_surf_pico_18S_121 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2010 |
2023-12-10 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432412 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_121 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2010 |
2023-12-10 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655198 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_38 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
|
2023-12-10 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38047965 |
|
|
|
|
|
|
| Malaspina_Mesozooplankon_177 |
Malaspina Mesozooplankon (AZTI) |
Malaspina Expedition |
|
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
|
2023-12-10 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN38047965 |
|
|
|
|
|
|
| BL_021023 |
BBMO temporal series (BBMO_ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2002 |
2023-10-02 |
Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene |
metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene |
|
False |
|
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_340 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639663 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_341 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639949 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_342 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639664 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_343 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639950 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_344 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639665 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_345 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10639951 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_685 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640173 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_686 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640288 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_687 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640174 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_688 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640289 |
|
|
|
|
|
|
| Eukariotyk_diversity_deepoceap_689 |
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
Malaspina Expedition |
|
Aquatic |
North Pacific Ocean |
Sediment |
deep marine sediment |
2012 |
2023-08-12 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA10640290 |
|
|
|
|
|
|
| BL_230801 |
BBMO temporal series (BBMO_ICM), BBMO MetaGenome nanoplankton (ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2023 |
2023-08-01 |
Metagenomics (WGS) |
metaG |
|
False |
|
|
|
|
|
|
|
| BL_230704 |
BBMO temporal series (BBMO_ICM), BBMO MetaGenome nanoplankton (ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2023 |
2023-07-04 |
Metagenomics (WGS) |
metaG |
|
False |
|
|
|
|
|
|
|
| BL_200623 |
BBMO temporal series (BBMO_ICM) |
BBMO temporal series |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Western Mediterranean Sea (Blanes Bay) |
Marine water |
coastal sea water |
2020 |
2023-06-20 |
Metagenomics (WGS), Metatranscriptomics, 18S rRNA gene, 16S rRNA gene |
metaG, metaT, metaB, 18S rRNA gene, 16S rRNA gene |
|
False |
|
|
|
|
|
|
|
| Malaspina_surf_pico_18S_87 |
Malaspina surface picoplankton 18S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-06-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMEA104432516 |
|
|
|
|
|
|
| Malaspina_surf_pico_16S_87 |
Malaspina surface picoplankton 16S rRNA gene (ICM) |
Malaspina Expedition |
Ecology of Marine Microbes - LOGLAB |
Aquatic |
Atlantic Ocean |
Marine water |
Opean ocean salt water |
2011 |
2023-06-11 |
16S rRNA gene |
16S rRNA gene, metaB |
|
True |
SAMEA104655302 |
|
|
|
|
|
|
| Malaspina_air_84 |
Malaspina air metagenome raw sequence reads (KAUST) |
Malaspina Expedition |
|
Air |
|
Air |
air over the ocean |
2011 |
2023-06-11 |
18S rRNA gene |
18S rRNA gene, metaB |
|
True |
SAMN04904037 |
|
|
|
|
|
|
| V3V4_16S_Wilson_49 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978933 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978933 |
| V3V4_16S_Wilson_50 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978934 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978934 |
| V3V4_16S_Wilson_51 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978935 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978935 |
| V3V4_16S_Wilson_52 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978936 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978936 |
| V3V4_16S_Wilson_53 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978937 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978937 |
| V3V4_16S_Wilson_54 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978938 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978938 |
| V3V4_16S_Wilson_55 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978939 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978939 |
| V3V4_16S_Wilson_56 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978940 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978940 |
| V3V4_16S_Wilson_57 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978941 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978941 |
| V3V4_16S_Wilson_58 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978942 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978942 |
| V3V4_16S_Wilson_59 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978943 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978943 |
| V3V4_16S_Wilson_60 |
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Microbial Ecology, Nutrition and Health |
Human |
Spain |
Other |
Cultured Akkermansia muciniphila ATCC BAA-835 isolate (reference strain, not patient-derived) |
2023 |
2023-06-01 |
|
RNA-Seq transcriptomics of cultured isolate, Illumina NovaSeq 6000 (not metatranscriptomics - single pure-culture strain, not a community sample) |
|
True |
ERR15978944 |
|
|
|
|
|
https://www.ebi.ac.uk/ena/browser/view/ERR15978944 |
