| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| Prokaryotic Gene Catalogs v1 (years 2009β2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMOβSOLA) |
|
Aquatic |
EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
| AIR_MontanaMontseny_BacterialAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AIR_MontanaMontseny_EukaryalAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Eukaryal air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_FunctionalGenes (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Abundance of C, N, S and P cycling marker genes (KEGG), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosBanyoles_16S_NovelOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Novel OTUs (highest novelty plot area) derived from the samples of AQC_LagosBanyoles_16S (CEAB). |
|
08/05/2010 |
08/05/2010 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession see article DOI |
https://doi.org/10.1007/s00248-015-0696-2 |
| AQC_LagosBanyoles_Metagenoma_TaxFuncTables (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomic composition and functional processes derived from the metagenomes of AQC_LagosBanyoles_Metagenoma (CEAB). |
|
08/05/2010 |
09/05/2010 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1038/ismej.2014.254 |
| AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). |
|
|
|
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1574-6941.12095 |
| SOIL_RizosferaOlivos_16S_ArchaeaAbundance (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Relative abundance of archaeal groups (16S rRNA gene cloning vs pyrotag) derived from the samples of SOIL_RizosferaOlivos_16S (CEAB). |
|
01/01/2009 |
31/12/2009 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1371/journal.pone.0125787 |
| Healthy children metataxonomies (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Human adult metagenomes (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Food metagenomes (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
SARS-CoV-2 patients |
SARS-CoV-2 patients |
|
|
|
False |
True |
0 |
|
28 |
|
SRA |
PRJNA1099539 |
https://pubmed.ncbi.nlm.nih.gov/39744158/ |
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows β this collection documents the ZOTU table as a whole. |
Animal |
Molecular ecology of marine benthos |
|
Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
4323 |
|
Other |
|
10.3389/fmars.2020.00201 |
| GUT_Conejo_16S_2020 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. |
|
|
|
False |
True |
0 |
|
126 |
|
NCBI SRA / MGnify |
SRP129755 |
https://doi.org/10.1038/s41598-020-80782-4 |
| AIR_MontanaMontseny_16S18S (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne bacteria and eukaryotes collected over almost three decades at a Montseny mountain station, and the influence of North African desert dust. |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
194 |
|
NCBI SRA |
PRJNA1004844 |
https://doi.org/10.1111/1462-2920.70046 |
| AIR_MontanaSierraNevada_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. |
|
21/06/2006 |
07/10/2008 |
False |
True |
0 |
|
54 |
|
NCBI SRA |
PRJNA509787 |
https://doi.org/10.1016/j.atmosenv.2019.01.038 |
| AQC_LagosAlpinos_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
304 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1111/1462-2920.14848 |
| AQC_LagosAlpinos_18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
227 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1038/s41598-018-22835-3 |
| AQC_LagosMonegros_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Microbial community assembly along a wide salinity gradient (0.1-40%) in shallow saline ponds of the Monegros Desert. |
|
12/11/2012 |
30/04/2014 |
False |
True |
0 |
|
274 |
|
NCBI SRA |
PRJNA429605 |
https://doi.org/10.1038/s41396-019-0454-4 |
| AQC_RiosMontseny_16S_2022 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). |
|
28/03/2019 |
20/02/2020 |
False |
True |
0 |
|
86 |
|
NCBI SRA |
PRJNA881938 |
https://doi.org/10.1111/fwb.14152 |
| AQC_RiosMontseny_16S_2024 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. |
|
19/04/2021 |
12/05/2021 |
False |
True |
0 |
|
|
|
NCBI SRA |
PRJNA1131982 |
https://doi.org/10.1029/2024JG008346 |
| GUT_Conejo_16S_2025 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. |
|
01/11/2019 |
01/02/2021 |
False |
True |
0 |
|
105 |
|
NCBI SRA |
PRJNA1031537 |
https://doi.org/10.1016/j.vetmic.2025.110688 |
| GUT_GanadoAntiparasitarios_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). |
|
17/07/2017 |
17/07/2017 |
False |
True |
0 |
|
66 |
|
NCBI SRA |
PRJNA515520 |
https://doi.org/10.1016/j.apsoil.2025.106704 |
| GUT_Jabali_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild boar in Spain and its relation to population management. |
|
18/10/2019 |
01/02/2020 |
False |
True |
0 |
|
88 |
|
NCBI SRA |
PRJNA886492 |
https://doi.org/10.1016/j.micres.2023.127444 |
| GUT_Liebre_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian hares living in organic and conventional farmland. |
|
21/10/2018 |
26/01/2019 |
False |
True |
0 |
|
148 |
|
NCBI SRA |
PRJNA1168362 |
https://doi.org/10.1016/j.envpol.2025.125862 |
| GUT_LinceIberico_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. |
|
|
|
False |
False |
0 |
|
|
|
NCBI SRA |
PRJNA1481532 |
|
| PHYL_BosqueEncinasMed_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. |
|
01/08/2016 |
01/12/2016 |
False |
True |
0 |
|
24 |
|
NCBI SRA |
PRJNA560873 |
https://doi.org/10.1111/1365-2745.13288 |
| PHYL_BosquesHayaPino_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. |
|
01/01/2016 |
31/12/2017 |
False |
True |
0 |
|
45 |
|
NCBI SRA |
PRJNA859654 |
https://doi.org/10.1038/s41561-023-01364-3 |
| SOIL_MonegrosGallocanta_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. |
|
07/10/2010 |
17/07/2014 |
False |
True |
0 |
|
34 |
|
NCBI SRA |
PRJNA420947 |
https://doi.org/10.1016/j.scitotenv.2018.09.050 |
| SOIL_RizosferaOlivos_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Nitrifying archaea and bacteria in the rhizosphere of 96 olive orchards and the soil, climate and management factors that shape them. |
|
01/05/2009 |
31/07/2009 |
False |
True |
0 |
|
146 |
|
NCBI SRA |
PRJNA276257 |
https://doi.org/10.1371/journal.pone.0125787 |
| Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Ulcerative Colitis patiens |
Oral and fecal microbiome from Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
21 |
|
NCBI |
PRJNA749643 |
https://doi.org/10.3390/cimb44040103 |
| Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Metabolic syndrome-Cardiovascular disease patients |
Individuals at cardiovascular risk and healthy subjects |
|
|
|
False |
True |
0 |
|
32 |
|
NCBI |
PRJNA717111 |
https://doi.org/10.1039/D1FO03942C |
| Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Ulcerative Colitis patiens, Nursing homes residents |
Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
20 |
|
NCBI |
PRJNA749914 /
PRJNA749643 |
https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103 |
| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| Styela plicata microbiome - multidimensional variability (CEAB) |
92 ascidian samples (gill + gut + tunic Γ juvenile + adult Γ 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. |
Animal |
Molecular ecology of marine benthos |
|
Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations |
|
27/4/20 |
27/4/20 |
False |
True |
0 |
|
112 |
|
NCBI |
PRJNA982737 |
10.1016/j.isci.2023.107812 |
| Styela plicata microbiome - spatio-temporal dynamics (CEAB) |
5 adults Γ 8 timepoints (Jan/Apr/Jul/Oct 2020β2021) Γ 2 compartments (gill, tunic) Γ 2 harbours β 160 ascidian + β 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (GaliΓ -Camps et al. 2023) but deposited separately. |
Animal |
Molecular ecology of marine benthos |
|
Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020βOct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
|
15/1/20 |
28/10/21 |
False |
True |
0 |
|
188 |
|
NCBI |
PRJNA1030313 |
10.1016/j.marpolbul.2024.116477 |
| AIR_MetroBarcelona_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition and abundance of airborne particles inside trains, on platforms and in lobbies of the Barcelona subway over four months. |
|
18/11/2013 |
11/02/2014 |
False |
True |
0 |
|
136 |
|
GenBank |
LT158063-LT158198 |
https://doi.org/10.1111/ina.12343 |
| AQC_LagosAlpinos_Cloning16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Vertical distribution and phylogeny of ammonia-oxidizing archaea in the water column of the deep Lake Redon (Pyrenees). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
162 |
|
GenBank |
HE589603-HE589764 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
|
|
GenBank |
HE598566-HE598696 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Cloning18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Genetic diversity of planktonic eukaryotes in 11 high-mountain lakes of the Central Pyrenees. |
|
01/07/2008 |
31/07/2008 |
False |
True |
0 |
|
343 |
|
GenBank |
HE655089-HE655431 |
https://doi.org/10.1111/j.1462-2920.2012.02797.x |
| AQC_LagosBanyoles_18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Protist diversity in the sulfidic waters of the Banyoles karstic lakes, from 454 pyrotag sequencing of six samples. |
|
10/05/2010 |
10/05/2010 |
False |
True |
0 |
|
455 |
|
GenBank |
LN735563-LN736017 |
https://doi.org/10.1111/1758-2229.12324 |
| AQC_LagosBanyoles_DGGE18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Protist diversity in sulfurous karstic lakes and coastal lagoons, from DGGE fingerprinting of 40 water samples. |
|
12/07/1989 |
10/07/2002 |
False |
True |
0 |
|
108 |
|
GenBank |
AJ862378-AJ862487 |
https://doi.org/10.1111/1758-2229.12324 |
| AQC_LagosHipersalinosChile_DGGE16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. |
|
|
|
False |
True |
0 |
|
46 |
|
GenBank |
LK391422-LK391467 |
https://doi.org/10.1007/s00792-014-0694-1 |
| AQC_LagosMonegros_DGGE16S18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial, archaeal and eukaryal diversity and novelty in saline shallow lakes of the Monegros Desert, in winter and spring. |
|
21/12/2004 |
25/05/2005 |
False |
True |
0 |
|
80 |
|
GenBank |
AM071495-AM071509, AM072914, AM072916-AM072918, AM072920-AM072921, AM072923, AM072928, AM072930, AM072932-AM072939, AM085949-AM085957, AM085959-AM085962, AM085964, AM085966-AM085969, AM085971, AM085973-AM085974, AM085976-AM085993, AM087460-AM087468 |
https://doi.org/10.1111/1574-6941.12139 |
