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Nombre Notas Biomas Grupos de investigación Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos ómicos Nº Aislados Nº Metagenomas Nº Muestras Análisis genómico Repositorio Accession ID Publicaciones
Yeast from beer bagasse (BSG) (IPLA) Food MicroHealth False False 6
Yeast from artichoke (IPLA) Food MicroHealth False False 3
Yeast from apple pomace (IPLA) Food MicroHealth False False 92
V3-V4 16S amplicons from rats - probiotic safety assay (IATA) Animal Microbial Ecology, Nutrition and Health Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 30/11/2017 False True 0 42 ENA PRJEB35764 10.3390/nu12020551
V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) Animal Microbial Ecology, Nutrition and Health Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota 01/02/2022 False True 0 56 ENA PRJEB71610
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) Human Microbial Ecology, Nutrition and Health Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis 01/02/2021 01/06/2023 False True 0 60 ENA PRJEB104642
V3-V4 16S amplicons from human feces - UCI patients (IATA) Human Microbial Ecology, Nutrition and Health Multi-centre study to assess the intestinal microbiota of ICU patients upon admission and follow-up of those with a sepsis diagnosis 05/06/2017 29/01/2018 False True 0 250 ENA PRJEB33360 10.1080/19490976.2019.1707610
V3-V4 16S amplicons from human feces - obese+IR children (IATA) Human Microbial Ecology, Nutrition and Health Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening 01/03/2013 False True 0 51 ENA PRJEB37005 10.1128/mSystems.00857-19
V3-V4 16S amplicons from human feces - newborns with CeD (IATA) Human Microbial Ecology, Nutrition and Health Gut microbiota trajectory in early life may predict development of celiac disease False True 0 39 ENA PRJEB23313 10.1186/s40168-018-0415-6
V3-V4 16S amplicons from human feces - AXOS intervention (IATA) Human Microbial Ecology, Nutrition and Health Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) 04/08/2014 False True 0 30 ENA PRJEB25727 10.1128/mSystems.00209-19
V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Animal Microbial Ecology, Nutrition and Health Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 11/11/2019 False True 0 29 ENA PRJEB66189
V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) Animal Microbial Ecology, Nutrition and Health Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 11/11/2019 False True 0 62 ENA PRJEB46294
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) Animal Microbial Ecology, Nutrition and Health Holdemanella biformis improves glucose tolerance via GLP-1 signalling in diet-induced obese mice 01/06/2018 False True 0 28 ENA PRJEB38356 10.1096/fj.202100126R
V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) Animal Microbial Ecology, Nutrition and Health Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice 01/11/2019 False True 0 50 ENA PRJEB37867 10.1080/19490976.2020.1865706
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Ulcerative Colitis patiens Oral and fecal microbiome from Ulcerative colitis patients False True 0 21 NCBI PRJNA749643 https://doi.org/10.3390/cimb44040103
Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Ulcerative Colitis patiens, Nursing homes residents Ulcerative colitis patients False True 0 20 NCBI PRJNA749914 / PRJNA749643 https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103
Tick Metataxonomies (5 pooled samples) Animal SabiO-Microbioomics Lab Exploring tick microbiota of Hyalomma lusitanicum False True 0 5 pooled samples SRA PRJNA681858 https://doi.org/10.1016/j.ttbdis.2020.101624
Tick metataxonomies Animal SabiO-Microbioomics Lab Host specificity and network structure of tick microbiota False True 0 46 SRA PRJNA1270924 https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI)
Styela plicata microbiome - spatio-temporal dynamics (CEAB) 5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià-Camps et al. 2023) but deposited separately. Animal Molecular ecology of marine benthos Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations 15/1/20 28/10/21 False True 0 188 NCBI PRJNA1030313 10.1016/j.marpolbul.2024.116477
Styela plicata microbiome - multidimensional variability (CEAB) 92 ascidian samples (gill + gut + tunic × juvenile + adult × 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (Galià-Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. Animal Molecular ecology of marine benthos Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations 27/4/20 27/4/20 False True 0 112 NCBI PRJNA982737 10.1016/j.isci.2023.107812
Streptococcus (IPLA) Human MicroHealth True False 9
Shotgun sequencing from human feces - caloric restriction intervention (IATA) Human Microbial Ecology, Nutrition and Health Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled False True 0 160 ENA PRJEB36898 10.1002/mnfr.202000996
rrn operon ONT sequencing from human feces - FMT (IATA) Human Microbial Ecology, Nutrition and Health Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation 10/04/2017 False True 0 3 ENA PRJEB33947 10.1101/2020.09.11.292896
rrn operon ONT sequencing from human feces - COVID patients (IATA) Human Microbial Ecology, Nutrition and Health Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection 01/10/2020 False True 0 119 ENA PRJEB102567
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) Human Microbial Ecology, Nutrition and Health Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives 01/04/2022 False True 0 6 ENA PRJEB74092
REMEI (ICM) Aquatic Ecology of Marine Microbes-PI: P.Gasol False False 1643
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes-PI: P.Gasol BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 1 https://doi.org/10.1021/jf402816r
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Aquatic Malaspina Expedition False True 0 ENA PRJEB48517
Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1002/mnfr.201600620
Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Nursing homes residents Nursing home residents False False 0 400
Microbial metabolism and intestinal barrier Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals and patients False True 0 1 NCBI PRJNA731070 https://doi.org/10.3390/microorganisms9071378
Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) Aquatic Ecology of Marine Microbes - LOGLAB False False 0 ZENODO https://doi.org/10.5281/zenodo.17159964
MED_ICM Aquatic Ecology of Marine Microbes-PI: P.Gasol False False 125
MARINHET_ICM_Tara Aquatic Ecology of Marine Microbes-PI: S.Acinas MARINHET True False 1246
MARINHET_ICM_MIFASOL Aquatic Ecology of Marine Microbes-PI: S.Acinas MARINHET False False 245
MARINHET_ICM_Malaspina Aquatic Ecology of Marine Microbes-PI: S.Acinas Malaspina Expedition, MARINHET False False 343
MARINHET_ICM_BBMO Aquatic Ecology of Marine Microbes-PI: S.Acinas BBMO temporal series, MARINHET False False 134
MARINHET_ICM_ATP09 Aquatic Ecology of Marine Microbes-PI: S.Acinas MARINHET False False 33
MARINHET_ICM Aquatic Ecology of Marine Microbes-PI: S.Acinas MARINHET False False 2001
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139
Malaspina surface picoplankton 18S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23913
Malaspina surface picoplankton 16S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB25224 Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026)
Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB36469 Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147)
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)
Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45015
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJNA330770
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 Sánchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)