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Nombre Notas Biomas Grupos de investigación Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos ómicos Nº Aislados Nº Metagenomas Nº Muestras Análisis genómico Repositorio Accession ID Publicaciones
Yeast from beer bagasse (BSG) (IPLA) Food MicroHealth False False 6
Yeast from artichoke (IPLA) Food MicroHealth False False 3
Yeast from apple pomace (IPLA) Food MicroHealth False False 92
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Ulcerative Colitis patiens Oral and fecal microbiome from Ulcerative colitis patients False True 0 21 NCBI PRJNA749643 https://doi.org/10.3390/cimb44040103
Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Ulcerative Colitis patiens, Nursing homes residents Ulcerative colitis patients False True 0 20 NCBI PRJNA749914 / PRJNA749643 https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103
Tick Metataxonomies (5 pooled samples) Animal SabiO-Microbioomics Lab Exploring tick microbiota of Hyalomma lusitanicum False True 0 5 pooled samples SRA PRJNA681858 https://doi.org/10.1016/j.ttbdis.2020.101624
Tick metataxonomies Animal SabiO-Microbioomics Lab Host specificity and network structure of tick microbiota False True 0 46 SRA PRJNA1270924 https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI)
Styela plicata microbiome - spatio-temporal dynamics (CEAB) 5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià-Camps et al. 2023) but deposited separately. Animal Molecular ecology of marine benthos Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations 15/1/20 28/10/21 False True 0 188 NCBI PRJNA1030313 10.1016/j.marpolbul.2024.116477
Styela plicata microbiome - multidimensional variability (CEAB) 92 ascidian samples (gill + gut + tunic × juvenile + adult × 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (Galià-Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. Animal Molecular ecology of marine benthos Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations 27/4/20 27/4/20 False True 0 112 NCBI PRJNA982737 10.1016/j.isci.2023.107812
Streptococcus (IPLA) Human MicroHealth True False 9
REMEI (ICM) Aquatic Ecology of Marine Microbes False False 1643
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 1 https://doi.org/10.1021/jf402816r
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Aquatic Malaspina Expedition False True 0 ENA PRJEB48517
Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1002/mnfr.201600620
Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Nursing homes residents Nursing home residents False False 0 400
Microbial metabolism and intestinal barrier Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals and patients False True 0 1 NCBI PRJNA731070 https://doi.org/10.3390/microorganisms9071378
Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) Aquatic Ecology of Marine Microbes - LOGLAB False False 0 ZENODO https://doi.org/10.5281/zenodo.17159964
MED_ICM Aquatic Ecology of Marine Microbes False False 125
MARINHET_ICM_Tara Aquatic Ecology of Marine Microbes MARINHET True False 1246
MARINHET_ICM_MIFASOL Aquatic Ecology of Marine Microbes MARINHET False False 245
MARINHET_ICM_Malaspina Aquatic Ecology of Marine Microbes Malaspina Expedition, MARINHET False False 343
MARINHET_ICM_BBMO Aquatic Ecology of Marine Microbes BBMO temporal series, MARINHET False False 134
MARINHET_ICM_ATP09 Aquatic Ecology of Marine Microbes MARINHET False False 33
MARINHET_ICM Aquatic Ecology of Marine Microbes MARINHET False False 2001
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139
Malaspina surface picoplankton 18S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23913
Malaspina surface picoplankton 16S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB25224 Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026)
Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB36469 Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147)
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)
Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45015
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJNA330770
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 Sánchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)
Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB46335
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB76155
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB44456
Malaspina diversity of deep microbial eukaryotes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB9943
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJNA736051
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45014
Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45011
Malaspina air metagenome raw sequence reads (KAUST) Air Malaspina Expedition False True 0 ENA PRJNA319484
Malaspina 16S rDNA size-fractions (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB27154
Lactic acid bacteria Málaga (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria Cádiz (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in Cádiz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria (IPLA) Human MicroHealth True False 9
Isolates from the human gastrointestinal tract (IPLA) Human MicroHealth, MicroHealth, MicroHealth, MicroHealth False False 34
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Metabolic syndrome-Cardiovascular disease patients Individuals at cardiovascular risk and healthy subjects False True 0 32 NCBI PRJNA717111 https://doi.org/10.1039/D1FO03942C
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/