| Colección de Hongos Micorrícicos Arbusculares (EEZ) |
|
Terrestrial |
EEZ-Mycorrhizal Ecology Lab |
Arbuscular Mycorrhizal Fungi |
|
|
|
|
False |
False |
210 |
|
|
|
|
|
|
| Fungal Microbiome of Festuca rubra subsp. pruinosa |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
130 |
|
|
|
|
|
https://doi.org/10.3389/fmicb.2018.03321 |
| Fungal Microbiome of Celtica gigantea |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
27 |
|
|
|
|
|
https://doi.org/10.1016/j.plantsci.2020.110762 |
| Lactic acid bacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Bifidobacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
16 |
|
|
|
|
|
|
| Streptococcus (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Healthy children metataxonomies (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Human adult metagenomes (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Ulcerative Colitis patiens |
Oral and fecal microbiome from Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
21 |
|
NCBI |
PRJNA749643 |
https://doi.org/10.3390/cimb44040103 |
| Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1002/mnfr.201600620 |
| Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
1 |
|
|
|
https://doi.org/10.1021/jf402816r |
| Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1021/jf4025135 |
| Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Nursing homes residents |
Nursing home residents |
|
|
|
False |
False |
0 |
|
400 |
|
|
|
|
| Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Metabolic syndrome-Cardiovascular disease patients |
Individuals at cardiovascular risk and healthy subjects |
|
|
|
False |
True |
0 |
|
32 |
|
NCBI |
PRJNA717111 |
https://doi.org/10.1039/D1FO03942C |
| Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Ulcerative Colitis patiens, Nursing homes residents |
Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
20 |
|
NCBI |
PRJNA749914 /
PRJNA749643 |
https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103 |
| Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
SARS-CoV-2 patients |
SARS-CoV-2 patients |
|
|
|
False |
True |
0 |
|
28 |
|
SRA |
PRJNA1099539 |
https://pubmed.ncbi.nlm.nih.gov/39744158/ |
| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Early Alzheimer patients |
Alzheimer patients |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Blautia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Clostridia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
2 |
|
|
|
|
|
|
| Isolates from the human gastrointestinal tract (IPLA) |
|
Human |
MicroHealth, MicroHealth, MicroHealth, MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives |
|
01/04/2022 |
|
False |
True |
0 |
|
6 |
|
ENA |
PRJEB74092 |
|
| rrn operon ONT sequencing from human feces - COVID patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection |
|
01/10/2020 |
|
False |
True |
0 |
|
119 |
|
ENA |
PRJEB102567 |
|
| rrn operon ONT sequencing from human feces - FMT (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation |
|
10/04/2017 |
|
False |
True |
0 |
|
3 |
|
ENA |
PRJEB33947 |
10.1101/2020.09.11.292896 |
| V3-V4 16S amplicons from human feces - AXOS intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) |
|
04/08/2014 |
|
False |
True |
0 |
|
30 |
|
ENA |
PRJEB25727 |
10.1128/mSystems.00209-19 |
| V3-V4 16S amplicons from human feces - UCI patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-centre study to assess the intestinal microbiota of ICU patients upon admission and follow-up of those with a sepsis diagnosis |
|
05/06/2017 |
29/01/2018 |
False |
True |
0 |
|
250 |
|
ENA |
PRJEB33360 |
10.1080/19490976.2019.1707610 |
| V3-V4 16S amplicons from human feces - newborns with CeD (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota trajectory in early life may predict development of celiac disease |
|
|
|
False |
True |
0 |
|
39 |
|
ENA |
PRJEB23313 |
10.1186/s40168-018-0415-6 |
| V3-V4 16S amplicons from human feces - obese+IR children (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening |
|
01/03/2013 |
|
False |
True |
0 |
|
51 |
|
ENA |
PRJEB37005 |
10.1128/mSystems.00857-19 |
| V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis |
|
01/02/2021 |
01/06/2023 |
False |
True |
0 |
|
60 |
|
ENA |
PRJEB104642 |
|
| Shotgun sequencing from human feces - caloric restriction intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled |
|
|
|
False |
True |
0 |
|
160 |
|
ENA |
PRJEB36898 |
10.1002/mnfr.202000996 |
| Food metagenomes (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Bacteria from whey (rennet coagulated milk in the lab) (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
13 |
|
|
|
|
|
|
| Bacteria from Gamoneu cheese rind (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
11 |
|
|
|
|
|
|
| Bacteria from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Bacteria from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
31 |
|
|
|
|
|
|
| Yeast from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
6 |
|
|
|
|
|
|
| Yeast from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Bacteria from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
89 |
|
|
|
|
|
|
| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| Lactic acid bacteria Málaga (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga |
|
14/06/2011 |
18/10/2011 |
True |
False |
19 |
|
10 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| Lactic acid bacteria Cádiz (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria isolated from raw milk cheeses in Cádiz |
|
14/06/2012 |
13/11/2012 |
True |
False |
0 |
|
12 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| BBMO MetaGenome nanoplankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO RNA_extraction (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO Viromes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| BBMO SAGs (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
