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Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
GUT_Conejo_16S_2020 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. False True 0 126 NCBI SRA / MGnify SRP129755 https://doi.org/10.1038/s41598-020-80782-4
Styela plicata microbiome - multidimensional variability (CEAB) 92 ascidian samples (gill + gut + tunic Γ— juvenile + adult Γ— 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. Animal Molecular ecology of marine benthos Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations 27/4/20 27/4/20 False True 0 112 NCBI PRJNA982737 10.1016/j.isci.2023.107812
GUT_Jabali_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild boar in Spain and its relation to population management. 18/10/2019 01/02/2020 False True 0 88 NCBI SRA PRJNA886492 https://doi.org/10.1016/j.micres.2023.127444
AQC_RiosMontseny_16S_2022 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). 28/03/2019 20/02/2020 False True 0 86 NCBI SRA PRJNA881938 https://doi.org/10.1111/fwb.14152
PHYL_BosquesHayaPino_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. 01/01/2016 31/12/2017 False True 0 45 NCBI SRA PRJNA859654 https://doi.org/10.1038/s41561-023-01364-3
Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Ulcerative Colitis patiens, Nursing homes residents Ulcerative colitis patients False True 0 20 NCBI PRJNA749914 / PRJNA749643 https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Ulcerative Colitis patiens Oral and fecal microbiome from Ulcerative colitis patients False True 0 21 NCBI PRJNA749643 https://doi.org/10.3390/cimb44040103
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJNA736051
Microbial metabolism and intestinal barrier Human Microbioma, AlimentaciΓ³n y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals and patients False True 0 1 NCBI PRJNA731070 https://doi.org/10.3390/microorganisms9071378
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Metabolic syndrome-Cardiovascular disease patients Individuals at cardiovascular risk and healthy subjects False True 0 32 NCBI PRJNA717111 https://doi.org/10.1039/D1FO03942C
Tick Metataxonomies (5 pooled samples) Animal SabiO-Microbioomics Lab Exploring tick microbiota of Hyalomma lusitanicum False True 0 5 pooled samples SRA PRJNA681858 https://doi.org/10.1016/j.ttbdis.2020.101624
Didemnum vexillum microbiome - global survey (CEAB) 70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. Animal Molecular ecology of marine benthos Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups 1/1/15 31/12/16 False True 0 120 NCBI PRJNA608680 10.3389/fmars.2020.00201
PHYL_BosqueEncinasMed_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. 01/08/2016 01/12/2016 False True 0 24 NCBI SRA PRJNA560873 https://doi.org/10.1111/1365-2745.13288
GUT_GanadoAntiparasitarios_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). 17/07/2017 17/07/2017 False True 0 66 NCBI SRA PRJNA515520 https://doi.org/10.1016/j.apsoil.2025.106704
AIR_MontanaSierraNevada_16S (CEAB) Air Ecology of the Global Microbiome (CEAB) Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. 21/06/2006 07/10/2008 False True 0 54 NCBI SRA PRJNA509787 https://doi.org/10.1016/j.atmosenv.2019.01.038
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
AQC_LagosMonegros_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial community assembly along a wide salinity gradient (0.1-40%) in shallow saline ponds of the Monegros Desert. 12/11/2012 30/04/2014 False True 0 274 NCBI SRA PRJNA429605 https://doi.org/10.1038/s41396-019-0454-4
SOIL_MonegrosGallocanta_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. 07/10/2010 17/07/2014 False True 0 34 NCBI SRA PRJNA420947 https://doi.org/10.1016/j.scitotenv.2018.09.050
AQC_LagosAlpinos_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. 01/07/2011 20/09/2011 False True 0 304 NCBI SRA PRJNA413654 https://doi.org/10.1111/1462-2920.14848
AQC_LagosAlpinos_18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. 01/07/2011 20/09/2011 False True 0 227 NCBI SRA PRJNA413654 https://doi.org/10.1038/s41598-018-22835-3
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJNA330770
Malaspina air metagenome raw sequence reads (KAUST) Air Malaspina Expedition False True 0 ENA PRJNA319484
SOIL_RizosferaOlivos_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Nitrifying archaea and bacteria in the rhizosphere of 96 olive orchards and the soil, climate and management factors that shape them. 01/05/2009 31/07/2009 False True 0 146 NCBI SRA PRJNA276257 https://doi.org/10.1371/journal.pone.0125787
GUT_LinceIberico_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. False False 0 NCBI SRA PRJNA1481532
Tick metataxonomies Animal SabiO-Microbioomics Lab Host specificity and network structure of tick microbiota False True 0 46 SRA PRJNA1270924 https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI)
GUT_Liebre_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian hares living in organic and conventional farmland. 21/10/2018 26/01/2019 False True 0 148 NCBI SRA PRJNA1168362 https://doi.org/10.1016/j.envpol.2025.125862
AQC_RiosMontseny_16S_2024 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. 19/04/2021 12/05/2021 False True 0 NCBI SRA PRJNA1131982 https://doi.org/10.1029/2024JG008346
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
GUT_Conejo_16S_2025 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. 01/11/2019 01/02/2021 False True 0 105 NCBI SRA PRJNA1031537 https://doi.org/10.1016/j.vetmic.2025.110688
Styela plicata microbiome - spatio-temporal dynamics (CEAB) 5 adults Γ— 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) Γ— 2 compartments (gill, tunic) Γ— 2 harbours β‰ˆ 160 ascidian + β‰ˆ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (GaliΓ -Camps et al. 2023) but deposited separately. Animal Molecular ecology of marine benthos Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations 15/1/20 28/10/21 False True 0 188 NCBI PRJNA1030313 10.1016/j.marpolbul.2024.116477
AIR_MontanaMontseny_16S18S (CEAB) Soil, Air Ecology of the Global Microbiome (CEAB) Airborne bacteria and eukaryotes collected over almost three decades at a Montseny mountain station, and the influence of North African desert dust. 05/12/1987 27/03/2015 False True 0 194 NCBI SRA PRJNA1004844 https://doi.org/10.1111/1462-2920.70046
Malaspina diversity of deep microbial eukaryotes (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB9943
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB76155
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) Human Microbial Ecology, Nutrition and Health Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives 01/04/2022 False True 0 6 ENA PRJEB74092
V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) Animal Microbial Ecology, Nutrition and Health Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota 01/02/2022 False True 0 56 ENA PRJEB71610
V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Animal Microbial Ecology, Nutrition and Health Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 11/11/2019 False True 0 29 ENA PRJEB66189
AQC_LagosAlpinos_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). 25/09/2013 25/09/2013 False True 0 2 ENA PRJEB6029 https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosBanyoles_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterial diversity and novelty in the deep sulfurous waters of three lakes of the Banyoles karstic area. 08/05/2010 08/05/2010 False True 0 18 ENA PRJEB5429 https://doi.org/10.1007/s00248-015-0696-2
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 SΓ‘nchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)
BBMO surface picoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False True 0 ENA PRJEB51979
BBMO surface nanoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False False 0 ENA PRJEB51979
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Aquatic Malaspina Expedition False True 0 ENA PRJEB48517
EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) Aquatic Malaspina Expedition False True 0 ENA PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035)
BBMO temporal series (BBMO_ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 20/03/2001 False False 0 ENA PRJEB48035
Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB46335
V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) Animal Microbial Ecology, Nutrition and Health Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 11/11/2019 False True 0 62 ENA PRJEB46294
Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45015
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45014