| Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB44456 |
|
| Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB76155 |
|
| EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 |
Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035) |
| Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139 |
|
| Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB52452 |
Sánchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1) |
| Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45015 |
|
| Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45014 |
|
| Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45011 |
|
| Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB46335 |
|
| Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA736051 |
|
| Malaspina Mesozooplankon (AZTI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA1033987 |
|
| Malaspina air metagenome raw sequence reads (KAUST) |
|
Air |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA319484 |
|
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48517 |
|
| Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
1 |
|
|
|
ENA |
PRJNA493151 |
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| MARINHET_ICM |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
False |
False |
2001 |
|
|
|
|
|
|
| MARINHET_ICM_ATP09 |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
False |
False |
33 |
|
|
|
|
|
|
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| MARINHET_ICM_MIFASOL |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
False |
False |
245 |
|
|
|
|
|
|
| MARINHET_ICM_Malaspina |
|
Aquatic |
Ecology of Marine Microbes |
Malaspina Expedition, MARINHET |
|
|
|
|
False |
False |
343 |
|
|
|
|
|
|
| MARINHET_ICM_Tara |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
True |
False |
1246 |
|
|
|
|
|
|
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| BBMO MetaGenome nanoplankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO RNA_extraction (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO Viromes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| BBMO SAGs (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
| Malaspina diversity of deep microbial eukaryotes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB9943 |
|
| Malaspina 16S rDNA size-fractions (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB27154 |
|
| Malaspina surface picoplankton 18S rRNA gene (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23913 |
|
| Malaspina surface picoplankton 16S rRNA gene (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB25224 |
Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026) |
| Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB36469 |
Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147) |
| Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23771 |
Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9) |
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
| Colección de Hongos Micorrícicos Arbusculares (EEZ) |
|
Terrestrial |
EEZ-Mycorrhizal Ecology Lab |
Arbuscular Mycorrhizal Fungi |
|
|
|
|
False |
False |
210 |
|
|
|
|
|
|
| Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Ulcerative Colitis patiens |
Oral and fecal microbiome from Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
21 |
|
NCBI |
PRJNA749643 |
https://doi.org/10.3390/cimb44040103 |
| Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1002/mnfr.201600620 |
| Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
1 |
|
|
|
https://doi.org/10.1021/jf402816r |
| Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1021/jf4025135 |
| Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Nursing homes residents |
Nursing home residents |
|
|
|
False |
False |
0 |
|
400 |
|
|
|
|
| Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Metabolic syndrome-Cardiovascular disease patients |
Individuals at cardiovascular risk and healthy subjects |
|
|
|
False |
True |
0 |
|
32 |
|
NCBI |
PRJNA717111 |
https://doi.org/10.1039/D1FO03942C |
| Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Ulcerative Colitis patiens, Nursing homes residents |
Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
20 |
|
NCBI |
PRJNA749914 /
PRJNA749643 |
https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103 |
| Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
SARS-CoV-2 patients |
SARS-CoV-2 patients |
|
|
|
False |
True |
0 |
|
28 |
|
SRA |
PRJNA1099539 |
https://pubmed.ncbi.nlm.nih.gov/39744158/ |
