| Lactic acid bacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Bifidobacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
16 |
|
|
|
|
|
|
| Streptococcus (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Healthy children metataxonomies (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Human adult metagenomes (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Food metagenomes (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Blautia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Clostridia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
2 |
|
|
|
|
|
|
| Bacteria from whey (rennet coagulated milk in the lab) (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
13 |
|
|
|
|
|
|
| Bacteria from Gamoneu cheese rind (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
11 |
|
|
|
|
|
|
| Bacteria from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Bacteria from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
31 |
|
|
|
|
|
|
| Yeast from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
6 |
|
|
|
|
|
|
| Yeast from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Bacteria from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
89 |
|
|
|
|
|
|
| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| Isolates from the human gastrointestinal tract (IPLA) |
|
Human |
MicroHealth, MicroHealth, MicroHealth, MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| Lactic acid bacteria Málaga (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga |
|
14/06/2011 |
18/10/2011 |
True |
False |
19 |
|
10 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| Lactic acid bacteria Cádiz (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria isolated from raw milk cheeses in Cádiz |
|
14/06/2012 |
13/11/2012 |
True |
False |
0 |
|
12 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| Styela plicata microbiome - multidimensional variability (CEAB) |
92 ascidian samples (gill + gut + tunic × juvenile + adult × 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (Galià-Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. |
Animal |
Molecular ecology of marine benthos |
|
Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations |
|
27/4/20 |
27/4/20 |
False |
True |
0 |
|
112 |
|
NCBI |
PRJNA982737 |
10.1016/j.isci.2023.107812 |
| Styela plicata microbiome - spatio-temporal dynamics (CEAB) |
5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià-Camps et al. 2023) but deposited separately. |
Animal |
Molecular ecology of marine benthos |
|
Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
|
15/1/20 |
28/10/21 |
False |
True |
0 |
|
188 |
|
NCBI |
PRJNA1030313 |
10.1016/j.marpolbul.2024.116477 |
| Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. |
Animal |
Molecular ecology of marine benthos |
|
Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
4323 |
|
Other |
|
10.3389/fmars.2020.00201 |
| Colección de Hongos Micorrícicos Arbusculares (EEZ) |
|
Terrestrial |
EEZ-Mycorrhizal Ecology Lab |
Arbuscular Mycorrhizal Fungi |
|
|
|
|
False |
False |
210 |
|
|
|
|
|
|
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| BBMO MetaGenome nanoplankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO RNA_extraction (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO Viromes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| BBMO SAGs (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Early Alzheimer patients |
Alzheimer patients |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Fungal Microbiome of Festuca rubra subsp. pruinosa |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
130 |
|
|
|
|
|
https://doi.org/10.3389/fmicb.2018.03321 |
| Fungal Microbiome of Celtica gigantea |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
27 |
|
|
|
|
|
https://doi.org/10.1016/j.plantsci.2020.110762 |
| Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1002/mnfr.201600620 |
| Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
1 |
|
|
|
https://doi.org/10.1021/jf402816r |
| Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1021/jf4025135 |
| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
| Malaspina diversity of deep microbial eukaryotes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB9943 |
|
