| Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
1 |
|
|
|
https://doi.org/10.1021/jf402816r |
| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| AQC_LagosAlpinos_Metagenoma (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
2 |
|
ENA |
PRJEB6029 |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| rrn operon ONT sequencing from human feces - FMT (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation |
|
10/04/2017 |
|
False |
True |
0 |
|
3 |
|
ENA |
PRJEB33947 |
10.1101/2020.09.11.292896 |
| rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives |
|
01/04/2022 |
|
False |
True |
0 |
|
6 |
|
ENA |
PRJEB74092 |
|
| Lactic acid bacteria MΓ‘laga (INIA) |
|
Food |
TecnologΓa de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓa de Alimentos) |
|
Lactic acid bacteria biodiversity in raw goat milk cheeses from MΓ‘laga |
|
14/06/2011 |
18/10/2011 |
True |
False |
19 |
|
10 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| Lactic acid bacteria CΓ‘diz (INIA) |
|
Food |
TecnologΓa de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓa de Alimentos) |
|
Lactic acid bacteria isolated from raw milk cheeses in CΓ‘diz |
|
14/06/2012 |
13/11/2012 |
True |
False |
0 |
|
12 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| AQC_LagosAlpinosNeuston_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacteria and archaea of the surface microlayer (neuston) and the underlying plankton in three Pyrenean lakes under two atmospheric aerosol conditions. |
|
18/09/2007 |
12/11/2007 |
False |
True |
0 |
|
12 |
|
CAMERA |
CAM_P_0000910 |
https://doi.org/10.1111/1574-6941.12068 |
| AQC_LagosBanyoles_Metagenoma (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomic diversity and functional potential of the microbial community of the sulfurous lakes CisοΏ½ and Banyoles (basin C-III). |
|
08/05/2010 |
09/05/2010 |
False |
True |
0 |
|
12 |
|
CAMERA |
CAM_P_0001174 |
https://doi.org/10.1038/ismej.2014.254 |
| AQC_LagosBanyoles_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial diversity and novelty in the deep sulfurous waters of three lakes of the Banyoles karstic area. |
|
08/05/2010 |
08/05/2010 |
False |
True |
0 |
|
18 |
|
ENA |
PRJEB5429 |
https://doi.org/10.1007/s00248-015-0696-2 |
| Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Ulcerative Colitis patiens, Nursing homes residents |
Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
20 |
|
NCBI |
PRJNA749914 /
PRJNA749643 |
https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103 |
| Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Ulcerative Colitis patiens |
Oral and fecal microbiome from Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
21 |
|
NCBI |
PRJNA749643 |
https://doi.org/10.3390/cimb44040103 |
| PHYL_BosqueEncinasMed_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. |
|
01/08/2016 |
01/12/2016 |
False |
True |
0 |
|
24 |
|
NCBI SRA |
PRJNA560873 |
https://doi.org/10.1111/1365-2745.13288 |
| AIR_ValleEbro_Metagenoma (CEAB) |
|
Soil, Aquatic, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne microbial metagenomes of the steppe and mountain areas of the Ebro Valley and their potential source environments (DRYLANDS project). |
|
03/02/2026 |
03/06/2026 |
False |
False |
0 |
|
25 |
|
|
|
|
| Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
SARS-CoV-2 patients |
SARS-CoV-2 patients |
|
|
|
False |
True |
0 |
|
28 |
|
SRA |
PRJNA1099539 |
https://pubmed.ncbi.nlm.nih.gov/39744158/ |
| V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Holdemanella biformis improves glucose tolerance via GLP-1 signalling in diet-induced obese mice |
|
01/06/2018 |
|
False |
True |
0 |
|
28 |
|
ENA |
PRJEB38356 |
10.1096/fj.202100126R |
| V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 |
|
11/11/2019 |
|
False |
True |
0 |
|
29 |
|
ENA |
PRJEB66189 |
|
| V3-V4 16S amplicons from human feces - AXOS intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) |
|
04/08/2014 |
|
False |
True |
0 |
|
30 |
|
ENA |
PRJEB25727 |
10.1128/mSystems.00209-19 |
| Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Metabolic syndrome-Cardiovascular disease patients |
Individuals at cardiovascular risk and healthy subjects |
|
|
|
False |
True |
0 |
|
32 |
|
NCBI |
PRJNA717111 |
https://doi.org/10.1039/D1FO03942C |
| SOIL_MonegrosGallocanta_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. |
|
07/10/2010 |
17/07/2014 |
False |
True |
0 |
|
34 |
|
NCBI SRA |
PRJNA420947 |
https://doi.org/10.1016/j.scitotenv.2018.09.050 |
| GUT_Artemia_DGGE16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. |
|
|
|
False |
True |
0 |
|
37 |
|
GenBank |
LK391468-LK391504 |
https://doi.org/10.1007/s00792-014-0694-1 |
| V3-V4 16S amplicons from human feces - newborns with CeD (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota trajectory in early life may predict development of celiac disease |
|
|
|
False |
True |
0 |
|
39 |
|
ENA |
PRJEB23313 |
10.1186/s40168-018-0415-6 |
| Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1002/mnfr.201600620 |
| Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1021/jf4025135 |
| AQC_LagosMonegros_Metagenoma (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Shotgun metagenomes of the microbial communities of three Monegros hypersaline lakes sampled over two years. |
|
13/11/2012 |
23/12/2014 |
False |
False |
0 |
|
41 |
|
|
|
|
| V3-V4 16S amplicons from rats - probiotic safety assay (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 |
|
30/11/2017 |
|
False |
True |
0 |
|
42 |
|
ENA |
PRJEB35764 |
10.3390/nu12020551 |
| PHYL_BosquesHayaPino_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. |
|
01/01/2016 |
31/12/2017 |
False |
True |
0 |
|
45 |
|
NCBI SRA |
PRJNA859654 |
https://doi.org/10.1038/s41561-023-01364-3 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| AQC_LagosHipersalinosChile_DGGE16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. |
|
|
|
False |
True |
0 |
|
46 |
|
GenBank |
LK391422-LK391467 |
https://doi.org/10.1007/s00792-014-0694-1 |
| V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice |
|
01/11/2019 |
|
False |
True |
0 |
|
50 |
|
ENA |
PRJEB37867 |
10.1080/19490976.2020.1865706 |
| V3-V4 16S amplicons from human feces - obese+IR children (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening |
|
01/03/2013 |
|
False |
True |
0 |
|
51 |
|
ENA |
PRJEB37005 |
10.1128/mSystems.00857-19 |
| AIR_MontanaSierraNevada_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. |
|
21/06/2006 |
07/10/2008 |
False |
True |
0 |
|
54 |
|
NCBI SRA |
PRJNA509787 |
https://doi.org/10.1016/j.atmosenv.2019.01.038 |
| V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota |
|
01/02/2022 |
|
False |
True |
0 |
|
56 |
|
ENA |
PRJEB71610 |
|
| V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis |
|
01/02/2021 |
01/06/2023 |
False |
True |
0 |
|
60 |
|
ENA |
PRJEB104642 |
|
| V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 |
|
11/11/2019 |
|
False |
True |
0 |
|
62 |
|
ENA |
PRJEB46294 |
|
| GUT_GanadoAntiparasitarios_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). |
|
17/07/2017 |
17/07/2017 |
False |
True |
0 |
|
66 |
|
NCBI SRA |
PRJNA515520 |
https://doi.org/10.1016/j.apsoil.2025.106704 |
| SOIL_GradienteOrdesa_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Soil microbiota along an altitudinal gradient of Ordesa y Monte Perdido National Park, within a biodiversity monitoring project for global change. |
|
|
|
False |
True |
0 |
|
72 |
|
|
|
|
| AQC_LagosMonegros_DGGE16S18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial, archaeal and eukaryal diversity and novelty in saline shallow lakes of the Monegros Desert, in winter and spring. |
|
21/12/2004 |
25/05/2005 |
False |
True |
0 |
|
80 |
|
GenBank |
AM071495-AM071509, AM072914, AM072916-AM072918, AM072920-AM072921, AM072923, AM072928, AM072930, AM072932-AM072939, AM085949-AM085957, AM085959-AM085962, AM085964, AM085966-AM085969, AM085971, AM085973-AM085974, AM085976-AM085993, AM087460-AM087468 |
https://doi.org/10.1111/1574-6941.12139 |
| SOIL_RizosferaPlantasRaras_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Root-associated bacteria (and aboveground arthropod visitors) of rare plant species in large and small populations. |
|
|
|
False |
True |
0 |
|
81 |
|
|
|
https://doi.org/10.1016/j.ppees.2026.125930 |
| AIR_ValleEbro_16S (CEAB) |
|
Soil, Aquatic, Plants, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne microbial communities (16S rRNA gene) of the steppe and mountain areas of the Ebro Valley and their potential source environments (DRYLANDS project). |
|
03/02/2026 |
03/06/2026 |
False |
False |
0 |
|
83 |
|
|
|
|
| AQC_RiosMontseny_16S_2022 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). |
|
28/03/2019 |
20/02/2020 |
False |
True |
0 |
|
86 |
|
NCBI SRA |
PRJNA881938 |
https://doi.org/10.1111/fwb.14152 |
| GUT_Jabali_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild boar in Spain and its relation to population management. |
|
18/10/2019 |
01/02/2020 |
False |
True |
0 |
|
88 |
|
NCBI SRA |
PRJNA886492 |
https://doi.org/10.1016/j.micres.2023.127444 |
| GUT_Conejo_16S_2025 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. |
|
01/11/2019 |
01/02/2021 |
False |
True |
0 |
|
105 |
|
NCBI SRA |
PRJNA1031537 |
https://doi.org/10.1016/j.vetmic.2025.110688 |
| AQC_LagosBanyoles_DGGE18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Protist diversity in sulfurous karstic lakes and coastal lagoons, from DGGE fingerprinting of 40 water samples. |
|
12/07/1989 |
10/07/2002 |
False |
True |
0 |
|
108 |
|
GenBank |
AJ862378-AJ862487 |
https://doi.org/10.1111/1758-2229.12324 |
| Styela plicata microbiome - multidimensional variability (CEAB) |
92 ascidian samples (gill + gut + tunic Γ juvenile + adult Γ 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. |
Animal |
Molecular ecology of marine benthos |
|
Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations |
|
27/4/20 |
27/4/20 |
False |
True |
0 |
|
112 |
|
NCBI |
PRJNA982737 |
10.1016/j.isci.2023.107812 |
| AQC_LagosMonegros_DGGE18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity and novelty of planktonic protists in 34 coastal and inland saline ponds of Spain and Chile. |
|
01/05/1992 |
30/06/2005 |
False |
True |
0 |
|
114 |
|
GenBank |
AM072914-AM072938, AM084278-AM084326, AM087460-AM087468, AM179805-AM179824, AM231690-AM231700 |
https://doi.org/10.1111/1574-6941.12095 |
| rrn operon ONT sequencing from human feces - COVID patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection |
|
01/10/2020 |
|
False |
True |
0 |
|
119 |
|
ENA |
PRJEB102567 |
|
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| GUT_Conejo_16S_2020 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. |
|
|
|
False |
True |
0 |
|
126 |
|
NCBI SRA / MGnify |
SRP129755 |
https://doi.org/10.1038/s41598-020-80782-4 |
| GUT_AnelidosArticos_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. |
|
|
|
False |
True |
0 |
|
128 |
|
GenBank |
LM999772-LM999899 |
https://doi.org/10.1111/1365-2656.12563 |
