|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Malaspina air metagenome raw sequence reads (KAUST) |
|
Air |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA319484 |
|
| AIR_MetroBarcelona_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition and abundance of airborne particles inside trains, on platforms and in lobbies of the Barcelona subway over four months. |
|
18/11/2013 |
11/02/2014 |
False |
True |
0 |
|
136 |
|
GenBank |
LT158063-LT158198 |
https://doi.org/10.1111/ina.12343 |
| AIR_MontanaPirineos_16S18S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Seasonal patterns of airborne bacteria and eukaryotes in a long time series (2007-2013) in the Pyrenees, and their link to atmospheric circulation. |
|
15/05/2007 |
15/10/2013 |
False |
True |
0 |
|
274 |
|
ENA |
PRJEB14358 |
https://doi.org/10.1073/pnas.1812826115 |
| AIR_MontanaSierraNevada_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. |
|
21/06/2006 |
07/10/2008 |
False |
True |
0 |
|
54 |
|
NCBI SRA |
PRJNA509787 |
https://doi.org/10.1016/j.atmosenv.2019.01.038 |
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| Styela plicata microbiome - multidimensional variability (CEAB) |
92 ascidian samples (gill + gut + tunic Γ juvenile + adult Γ 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. |
Animal |
Molecular ecology of marine benthos |
|
Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations |
|
27/4/20 |
27/4/20 |
False |
True |
0 |
|
112 |
|
NCBI |
PRJNA982737 |
10.1016/j.isci.2023.107812 |
| Styela plicata microbiome - spatio-temporal dynamics (CEAB) |
5 adults Γ 8 timepoints (Jan/Apr/Jul/Oct 2020β2021) Γ 2 compartments (gill, tunic) Γ 2 harbours β 160 ascidian + β 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (GaliΓ -Camps et al. 2023) but deposited separately. |
Animal |
Molecular ecology of marine benthos |
|
Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020βOct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
|
15/1/20 |
28/10/21 |
False |
True |
0 |
|
188 |
|
NCBI |
PRJNA1030313 |
10.1016/j.marpolbul.2024.116477 |
| Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows β this collection documents the ZOTU table as a whole. |
Animal |
Molecular ecology of marine benthos |
|
Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
4323 |
|
Other |
|
10.3389/fmars.2020.00201 |
| V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota |
|
01/02/2022 |
|
False |
True |
0 |
|
56 |
|
ENA |
PRJEB71610 |
|
| V3-V4 16S amplicons from rats - probiotic safety assay (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 |
|
30/11/2017 |
|
False |
True |
0 |
|
42 |
|
ENA |
PRJEB35764 |
10.3390/nu12020551 |
| V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice |
|
01/11/2019 |
|
False |
True |
0 |
|
50 |
|
ENA |
PRJEB37867 |
10.1080/19490976.2020.1865706 |
| V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Holdemanella biformis improves glucose tolerance via GLP-1 signalling in diet-induced obese mice |
|
01/06/2018 |
|
False |
True |
0 |
|
28 |
|
ENA |
PRJEB38356 |
10.1096/fj.202100126R |
| V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 |
|
11/11/2019 |
|
False |
True |
0 |
|
62 |
|
ENA |
PRJEB46294 |
|
| V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 |
|
11/11/2019 |
|
False |
True |
0 |
|
29 |
|
ENA |
PRJEB66189 |
|
| GUT_Artemia_DGGE16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. |
|
|
|
False |
True |
0 |
|
37 |
|
GenBank |
LK391468-LK391504 |
https://doi.org/10.1007/s00792-014-0694-1 |
| GUT_Ciervo_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian red deer in relation to physiological stress, reproductive cycle and hunting management in Sierra Morena. |
|
20/10/2020 |
05/02/2022 |
False |
False |
0 |
|
224 |
|
|
|
|
| GUT_Conejo_16S_2020 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. |
|
|
|
False |
True |
0 |
|
126 |
|
NCBI SRA / MGnify |
SRP129755 |
https://doi.org/10.1038/s41598-020-80782-4 |
| GUT_Conejo_16S_2025 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. |
|
01/11/2019 |
01/02/2021 |
False |
True |
0 |
|
105 |
|
NCBI SRA |
PRJNA1031537 |
https://doi.org/10.1016/j.vetmic.2025.110688 |
| GUT_GanadoAntiparasitarios_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). |
|
17/07/2017 |
17/07/2017 |
False |
True |
0 |
|
66 |
|
NCBI SRA |
PRJNA515520 |
https://doi.org/10.1016/j.apsoil.2025.106704 |
| GUT_Jabali_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild boar in Spain and its relation to population management. |
|
18/10/2019 |
01/02/2020 |
False |
True |
0 |
|
88 |
|
NCBI SRA |
PRJNA886492 |
https://doi.org/10.1016/j.micres.2023.127444 |
| GUT_Liebre_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian hares living in organic and conventional farmland. |
|
21/10/2018 |
26/01/2019 |
False |
True |
0 |
|
148 |
|
NCBI SRA |
PRJNA1168362 |
https://doi.org/10.1016/j.envpol.2025.125862 |
| GUT_LinceIberico_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. |
|
|
|
False |
False |
0 |
|
|
|
NCBI SRA |
PRJNA1481532 |
|
| GUT_AnelidosArticos_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. |
|
|
|
False |
True |
0 |
|
128 |
|
GenBank |
LM999772-LM999899 |
https://doi.org/10.1111/1365-2656.12563 |
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| BBMO MetaGenome nanoplankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO SAGs (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
| Malaspina diversity of deep microbial eukaryotes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB9943 |
|
| Malaspina 16S rDNA size-fractions (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB27154 |
|
| Malaspina surface picoplankton 18S rRNA gene (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23913 |
|
| Malaspina surface picoplankton 16S rRNA gene (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB25224 |
Ruiz-GonzΓ‘lez C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026) |
| Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB36469 |
Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147) |
| Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23771 |
Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9) |
| Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB44456 |
|
| Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB76155 |
|
| EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 |
Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035) |
| Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139 |
|
| Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB52452 |
SΓ‘nchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1) |
| Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45015 |
|
| Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45014 |
|
| Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45011 |
|
| Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB46335 |
|
