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Nombre Notas Biomas Grupos de investigación Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos ómicos Nº Aislados Nº Metagenomas Nº Muestras Análisis genómico Repositorio Accession ID Publicaciones
Lactic acid bacteria (IPLA) Human MicroHealth True False 9
Bifidobacteria (IPLA) Human MicroHealth True False 16
Streptococcus (IPLA) Human MicroHealth True False 9
Healthy children metataxonomies (IPLA) Human MicroHealth False True 0 SRA
BBMO MetaGenome nanoplankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO RNA_extraction (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO Viromes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False False 0
BBMO SAGs (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
Human adult metagenomes (IPLA) Human MicroHealth False True 0 SRA
Food metagenomes (IPLA) Food MicroHealth False True 0 SRA
Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1002/mnfr.201600620
Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 1 https://doi.org/10.1021/jf402816r
Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1021/jf4025135
Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Nursing homes residents Nursing home residents False False 0 400
Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) Human Microbioma, Alimentación y Salud (BEA) Early Alzheimer patients Alzheimer patients False False 0
Colección de Hongos Micorrícicos Arbusculares (EEZ) Terrestrial EEZ-Mycorrhizal Ecology Lab Arbuscular Mycorrhizal Fungi False False 210
Blautia (IPLA) Human MicroHealth False False 3
Clostridia (IPLA) Human MicroHealth False False 2
Bacteria from whey (rennet coagulated milk in the lab) (IPLA) Food MicroHealth 2020 2024 False False 13
Bacteria from Gamoneu cheese rind (IPLA) Food MicroHealth 2020 2024 False False 11
Bacteria from beer bagasse (BSG) (IPLA) Food MicroHealth False False 34
Bacteria from artichoke (IPLA) Food MicroHealth False False 31
Yeast from beer bagasse (BSG) (IPLA) Food MicroHealth False False 6
Yeast from artichoke (IPLA) Food MicroHealth False False 3
Bacteria from apple pomace (IPLA) Food MicroHealth False False 89
Yeast from apple pomace (IPLA) Food MicroHealth False False 92
Isolates from the human gastrointestinal tract (IPLA) Human MicroHealth, MicroHealth, MicroHealth, MicroHealth False False 34
MARINHET_ICM Aquatic Ecology of Marine Microbes MARINHET False False 2001
MARINHET_ICM_ATP09 Aquatic Ecology of Marine Microbes MARINHET False False 33
MARINHET_ICM_BBMO Aquatic Ecology of Marine Microbes BBMO temporal series, MARINHET False False 134
MARINHET_ICM_MIFASOL Aquatic Ecology of Marine Microbes MARINHET False False 245
MARINHET_ICM_Malaspina Aquatic Ecology of Marine Microbes Malaspina Expedition, MARINHET False False 343
MARINHET_ICM_Tara Aquatic Ecology of Marine Microbes MARINHET True False 1246
Fungal Microbiome of Festuca rubra subsp. pruinosa Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 130 https://doi.org/10.3389/fmicb.2018.03321
Fungal Microbiome of Celtica gigantea Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 27 https://doi.org/10.1016/j.plantsci.2020.110762
MED_ICM Aquatic Ecology of Marine Microbes False False 125
Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) Aquatic Ecology of Marine Microbes - LOGLAB False False 0 ZENODO https://doi.org/10.5281/zenodo.17159964
REMEI (ICM) Aquatic Ecology of Marine Microbes False False 1643
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
False False 0
Lactic acid bacteria Málaga (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria Cádiz (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in Cádiz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Didemnum vexillum microbiome - global survey ZOTUs (CEAB) Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. Animal Molecular ecology of marine benthos Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries 1/1/15 31/12/16 False True 0 4323 Other 10.3389/fmars.2020.00201
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)
BBMO 18S rRNA gene pico- & nano-plankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 26/01/2004 07/06/2016 False True 0 ENA PRJEB23788 Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929)
Malaspina surface picoplankton 18S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23913
Malaspina surface picoplankton 16S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB25224 Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026)
Malaspina 16S rDNA size-fractions (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB27154
Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB36469 Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147)
BBMO 16S rRNA gene pico- & nano-plankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 28/01/2003 02/08/2016 False True 0 ENA PRJEB38773