Contacto
CSIC Microbioma Hub

Colecciones

Limpiar
Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
AQC_RiosMontseny_16S_2022 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). 28/03/2019 20/02/2020 False True 0 86 NCBI SRA PRJNA881938 https://doi.org/10.1111/fwb.14152
AQC_RiosMontseny_16S_2024 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. 19/04/2021 12/05/2021 False True 0 NCBI SRA PRJNA1131982 https://doi.org/10.1029/2024JG008346
GUT_Artemia_DGGE16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. False True 0 37 GenBank LK391468-LK391504 https://doi.org/10.1007/s00792-014-0694-1
GUT_Ciervo_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian red deer in relation to physiological stress, reproductive cycle and hunting management in Sierra Morena. 20/10/2020 05/02/2022 False False 0 224
GUT_Conejo_16S_2020 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. False True 0 126 NCBI SRA / MGnify SRP129755 https://doi.org/10.1038/s41598-020-80782-4
GUT_Conejo_16S_2025 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. 01/11/2019 01/02/2021 False True 0 105 NCBI SRA PRJNA1031537 https://doi.org/10.1016/j.vetmic.2025.110688
GUT_GanadoAntiparasitarios_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). 17/07/2017 17/07/2017 False True 0 66 NCBI SRA PRJNA515520 https://doi.org/10.1016/j.apsoil.2025.106704
GUT_Jabali_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild boar in Spain and its relation to population management. 18/10/2019 01/02/2020 False True 0 88 NCBI SRA PRJNA886492 https://doi.org/10.1016/j.micres.2023.127444
GUT_Liebre_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian hares living in organic and conventional farmland. 21/10/2018 26/01/2019 False True 0 148 NCBI SRA PRJNA1168362 https://doi.org/10.1016/j.envpol.2025.125862
GUT_LinceIberico_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. False False 0 NCBI SRA PRJNA1481532
GUT_AnelidosArticos_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. False True 0 128 GenBank LM999772-LM999899 https://doi.org/10.1111/1365-2656.12563
PHYL_BosqueEncinasMed_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. 01/08/2016 01/12/2016 False True 0 24 NCBI SRA PRJNA560873 https://doi.org/10.1111/1365-2745.13288
PHYL_BosquesHayaPino_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. 01/01/2016 31/12/2017 False True 0 45 NCBI SRA PRJNA859654 https://doi.org/10.1038/s41561-023-01364-3
SOIL_GradienteOrdesa_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Soil microbiota along an altitudinal gradient of Ordesa y Monte Perdido National Park, within a biodiversity monitoring project for global change. False True 0 72
SOIL_MonegrosGallocanta_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. 07/10/2010 17/07/2014 False True 0 34 NCBI SRA PRJNA420947 https://doi.org/10.1016/j.scitotenv.2018.09.050
SOIL_RizosferaOlivos_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Nitrifying archaea and bacteria in the rhizosphere of 96 olive orchards and the soil, climate and management factors that shape them. 01/05/2009 31/07/2009 False True 0 146 NCBI SRA PRJNA276257 https://doi.org/10.1371/journal.pone.0125787
SOIL_RizosferaOlivos_16S_ArchaeaAbundance (CEAB) Soil Ecology of the Global Microbiome (CEAB) Relative abundance of archaeal groups (16S rRNA gene cloning vs pyrotag) derived from the samples of SOIL_RizosferaOlivos_16S (CEAB). 01/01/2009 31/12/2009 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1371/journal.pone.0125787
SOIL_RizosferaPlantasRaras_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Root-associated bacteria (and aboveground arthropod visitors) of rare plant species in large and small populations. False True 0 81 https://doi.org/10.1016/j.ppees.2026.125930
MARINHET_ICM Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET False False 2001
MARINHET_ICM_ATP09 Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET False False 33
MARINHET_ICM_BBMO Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) BBMO temporal series, MARINHET False False 134
MARINHET_ICM_MIFASOL Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET False False 245
MARINHET_ICM_Malaspina Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) Malaspina Expedition, MARINHET False False 343
MARINHET_ICM_Tara Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET True False 1246
MED_ICM Aquatic Ecology of Marine Microbes-PI: P.Gasol (ICM) False False 125
REMEI (ICM) Aquatic Ecology of Marine Microbes-PI: P.Gasol (ICM) False False 1643
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB44456
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB76155
EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) Aquatic Malaspina Expedition False True 0 ENA PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035)
Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 SΓ‘nchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)
Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45015
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45014
Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45011
Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB46335
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJNA736051
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
Malaspina air metagenome raw sequence reads (KAUST) Air Malaspina Expedition False True 0 ENA PRJNA319484
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Aquatic Malaspina Expedition False True 0 ENA PRJEB48517
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
False False 0
False False 0
False False 0