| Malaspina air metagenome raw sequence reads (KAUST) |
|
Air |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA319484 |
|
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48517 |
|
| Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
1 |
|
|
|
ENA |
PRJNA493151 |
|
| Blautia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Clostridia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
2 |
|
|
|
|
|
|
| Bacteria from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Bacteria from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
31 |
|
|
|
|
|
|
| Yeast from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
6 |
|
|
|
|
|
|
| Yeast from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Bacteria from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
89 |
|
|
|
|
|
|
| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| Isolates from the human gastrointestinal tract (IPLA) |
|
Human |
MicroHealth, MicroHealth, MicroHealth, MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| MARINHET_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
2001 |
|
|
|
|
|
|
| MARINHET_ICM_ATP09 |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
33 |
|
|
|
|
|
|
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| MARINHET_ICM_MIFASOL |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
245 |
|
|
|
|
|
|
| MARINHET_ICM_Malaspina |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
Malaspina Expedition, MARINHET |
|
|
|
|
False |
False |
343 |
|
|
|
|
|
|
| MARINHET_ICM_Tara |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
True |
False |
1246 |
|
|
|
|
|
|
| Fungal Microbiome of Festuca rubra subsp. pruinosa |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
130 |
|
|
|
|
|
https://doi.org/10.3389/fmicb.2018.03321 |
| Fungal Microbiome of Celtica gigantea |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
27 |
|
|
|
|
|
https://doi.org/10.1016/j.plantsci.2020.110762 |
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol (ICM) |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol (ICM) |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| V3-V4 16S amplicons from human feces - newborns with CeD (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota trajectory in early life may predict development of celiac disease |
|
|
|
False |
True |
0 |
|
39 |
|
ENA |
PRJEB23313 |
10.1186/s40168-018-0415-6 |
| Shotgun sequencing from human feces - caloric restriction intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled |
|
|
|
False |
True |
0 |
|
160 |
|
ENA |
PRJEB36898 |
10.1002/mnfr.202000996 |
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| AQC_LagosHipersalinosChile_DGGE16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. |
|
|
|
False |
True |
0 |
|
46 |
|
GenBank |
LK391422-LK391467 |
https://doi.org/10.1007/s00792-014-0694-1 |
| AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). |
|
|
|
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1574-6941.12095 |
| GUT_Artemia_DGGE16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. |
|
|
|
False |
True |
0 |
|
37 |
|
GenBank |
LK391468-LK391504 |
https://doi.org/10.1007/s00792-014-0694-1 |
| GUT_Conejo_16S_2020 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. |
|
|
|
False |
True |
0 |
|
126 |
|
NCBI SRA / MGnify |
SRP129755 |
https://doi.org/10.1038/s41598-020-80782-4 |
| GUT_LinceIberico_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. |
|
|
|
False |
False |
0 |
|
|
|
NCBI SRA |
PRJNA1481532 |
|
| GUT_AnelidosArticos_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. |
|
|
|
False |
True |
0 |
|
128 |
|
GenBank |
LM999772-LM999899 |
https://doi.org/10.1111/1365-2656.12563 |
| SOIL_GradienteOrdesa_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Soil microbiota along an altitudinal gradient of Ordesa y Monte Perdido National Park, within a biodiversity monitoring project for global change. |
|
|
|
False |
True |
0 |
|
72 |
|
|
|
|
| SOIL_RizosferaPlantasRaras_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Root-associated bacteria (and aboveground arthropod visitors) of rare plant species in large and small populations. |
|
|
|
False |
True |
0 |
|
81 |
|
|
|
https://doi.org/10.1016/j.ppees.2026.125930 |
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Bacteria from whey (rennet coagulated milk in the lab) (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
13 |
|
|
|
|
|
|
| Bacteria from Gamoneu cheese rind (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
11 |
|
|
|
|
|
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
|
Aquatic |
EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
