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Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosAlpinos_Metagenoma_FunctionalGenes (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Abundance of C, N, S and P cycling marker genes (KEGG), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
Tick Metataxonomies (5 pooled samples) Animal SabiO-Microbioomics Lab Exploring tick microbiota of Hyalomma lusitanicum False True 0 5 pooled samples SRA PRJNA681858 https://doi.org/10.1016/j.ttbdis.2020.101624
GUT_Conejo_16S_2025 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. 01/11/2019 01/02/2021 False True 0 105 NCBI SRA PRJNA1031537 https://doi.org/10.1016/j.vetmic.2025.110688
Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1021/jf4025135
Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 1 https://doi.org/10.1021/jf402816r
AQC_RiosMontseny_16S_2024 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. 19/04/2021 12/05/2021 False True 0 NCBI SRA PRJNA1131982 https://doi.org/10.1029/2024JG008346
AQC_LagosAlpinos_Cloning16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Vertical distribution and phylogeny of ammonia-oxidizing archaea in the water column of the deep Lake Redon (Pyrenees). 20/09/2007 17/04/2008 False True 0 162 GenBank HE589603-HE589764 https://doi.org/10.1038/ismej.2012.33
AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). 20/09/2007 17/04/2008 False True 0 GenBank HE598566-HE598696 https://doi.org/10.1038/ismej.2012.33
AQC_LagosBanyoles_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomic diversity and functional potential of the microbial community of the sulfurous lakes CisοΏ½ and Banyoles (basin C-III). 08/05/2010 09/05/2010 False True 0 12 CAMERA CAM_P_0001174 https://doi.org/10.1038/ismej.2014.254
AQC_LagosBanyoles_Metagenoma_TaxFuncTables (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomic composition and functional processes derived from the metagenomes of AQC_LagosBanyoles_Metagenoma (CEAB). 08/05/2010 09/05/2010 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1038/ismej.2014.254
AQC_LagosMonegros_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial community assembly along a wide salinity gradient (0.1-40%) in shallow saline ponds of the Monegros Desert. 12/11/2012 30/04/2014 False True 0 274 NCBI SRA PRJNA429605 https://doi.org/10.1038/s41396-019-0454-4
PHYL_BosquesHayaPino_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. 01/01/2016 31/12/2017 False True 0 45 NCBI SRA PRJNA859654 https://doi.org/10.1038/s41561-023-01364-3
AQC_LagosAlpinos_18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. 01/07/2011 20/09/2011 False True 0 227 NCBI SRA PRJNA413654 https://doi.org/10.1038/s41598-018-22835-3
GUT_Conejo_16S_2020 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. False True 0 126 NCBI SRA / MGnify SRP129755 https://doi.org/10.1038/s41598-020-80782-4
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Metabolic syndrome-Cardiovascular disease patients Individuals at cardiovascular risk and healthy subjects False True 0 32 NCBI PRJNA717111 https://doi.org/10.1039/D1FO03942C
AIR_MontanaPirineos_16S18S (CEAB) Air Ecology of the Global Microbiome (CEAB) Seasonal patterns of airborne bacteria and eukaryotes in a long time series (2007-2013) in the Pyrenees, and their link to atmospheric circulation. 15/05/2007 15/10/2013 False True 0 274 ENA PRJEB14358 https://doi.org/10.1073/pnas.1812826115
GUT_AnelidosArticos_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. False True 0 128 GenBank LM999772-LM999899 https://doi.org/10.1111/1365-2656.12563
PHYL_BosqueEncinasMed_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. 01/08/2016 01/12/2016 False True 0 24 NCBI SRA PRJNA560873 https://doi.org/10.1111/1365-2745.13288
AQC_LagosAlpinos_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. 01/07/2011 20/09/2011 False True 0 304 NCBI SRA PRJNA413654 https://doi.org/10.1111/1462-2920.14848
AIR_MontanaMontseny_16S18S (CEAB) Soil, Air Ecology of the Global Microbiome (CEAB) Airborne bacteria and eukaryotes collected over almost three decades at a Montseny mountain station, and the influence of North African desert dust. 05/12/1987 27/03/2015 False True 0 194 NCBI SRA PRJNA1004844 https://doi.org/10.1111/1462-2920.70046
AIR_MontanaMontseny_BacterialAirCore (CEAB) Soil, Air Ecology of the Global Microbiome (CEAB) Bacterial air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). 05/12/1987 27/03/2015 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1111/1462-2920.70046
AIR_MontanaMontseny_EukaryalAirCore (CEAB) Soil, Air Ecology of the Global Microbiome (CEAB) Eukaryal air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). 05/12/1987 27/03/2015 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1111/1462-2920.70046
AQC_LagosAlpinosNeuston_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacteria and archaea of the surface microlayer (neuston) and the underlying plankton in three Pyrenean lakes under two atmospheric aerosol conditions. 18/09/2007 12/11/2007 False True 0 12 CAMERA CAM_P_0000910 https://doi.org/10.1111/1574-6941.12068
AQC_LagosMonegros_DGGE18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Diversity and novelty of planktonic protists in 34 coastal and inland saline ponds of Spain and Chile. 01/05/1992 30/06/2005 False True 0 114 GenBank AM072914-AM072938, AM084278-AM084326, AM087460-AM087468, AM179805-AM179824, AM231690-AM231700 https://doi.org/10.1111/1574-6941.12095
AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1111/1574-6941.12095
AQC_LagosMonegros_DGGE16S18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterial, archaeal and eukaryal diversity and novelty in saline shallow lakes of the Monegros Desert, in winter and spring. 21/12/2004 25/05/2005 False True 0 80 GenBank AM071495-AM071509, AM072914, AM072916-AM072918, AM072920-AM072921, AM072923, AM072928, AM072930, AM072932-AM072939, AM085949-AM085957, AM085959-AM085962, AM085964, AM085966-AM085969, AM085971, AM085973-AM085974, AM085976-AM085993, AM087460-AM087468 https://doi.org/10.1111/1574-6941.12139
AQC_LagosBanyoles_18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Protist diversity in the sulfidic waters of the Banyoles karstic lakes, from 454 pyrotag sequencing of six samples. 10/05/2010 10/05/2010 False True 0 455 GenBank LN735563-LN736017 https://doi.org/10.1111/1758-2229.12324
AQC_LagosBanyoles_DGGE18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Protist diversity in sulfurous karstic lakes and coastal lagoons, from DGGE fingerprinting of 40 water samples. 12/07/1989 10/07/2002 False True 0 108 GenBank AJ862378-AJ862487 https://doi.org/10.1111/1758-2229.12324
AQC_RiosMontseny_16S_2022 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). 28/03/2019 20/02/2020 False True 0 86 NCBI SRA PRJNA881938 https://doi.org/10.1111/fwb.14152
AIR_MetroBarcelona_16S (CEAB) Air Ecology of the Global Microbiome (CEAB) Bacterial composition and abundance of airborne particles inside trains, on platforms and in lobbies of the Barcelona subway over four months. 18/11/2013 11/02/2014 False True 0 136 GenBank LT158063-LT158198 https://doi.org/10.1111/ina.12343
AQC_LagosAlpinos_Cloning18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Genetic diversity of planktonic eukaryotes in 11 high-mountain lakes of the Central Pyrenees. 01/07/2008 31/07/2008 False True 0 343 GenBank HE655089-HE655431 https://doi.org/10.1111/j.1462-2920.2012.02797.x
SOIL_RizosferaOlivos_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Nitrifying archaea and bacteria in the rhizosphere of 96 olive orchards and the soil, climate and management factors that shape them. 01/05/2009 31/07/2009 False True 0 146 NCBI SRA PRJNA276257 https://doi.org/10.1371/journal.pone.0125787
SOIL_RizosferaOlivos_16S_ArchaeaAbundance (CEAB) Soil Ecology of the Global Microbiome (CEAB) Relative abundance of archaeal groups (16S rRNA gene cloning vs pyrotag) derived from the samples of SOIL_RizosferaOlivos_16S (CEAB). 01/01/2009 31/12/2009 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1371/journal.pone.0125787
Fungal Microbiome of Festuca rubra subsp. pruinosa Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 130 https://doi.org/10.3389/fmicb.2018.03321
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Ulcerative Colitis patiens Oral and fecal microbiome from Ulcerative colitis patients False True 0 21 NCBI PRJNA749643 https://doi.org/10.3390/cimb44040103
Microbial metabolism and intestinal barrier Human Microbioma, AlimentaciΓ³n y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals and patients False True 0 1 NCBI PRJNA731070 https://doi.org/10.3390/microorganisms9071378
Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) Aquatic EMM - LOGLAB (ICM) False False 0 ZENODO https://doi.org/10.5281/zenodo.17159964
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/
EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) Aquatic Malaspina Expedition False True 0 ENA PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035)
Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB36469 Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147)
Malaspina surface picoplankton 16S rRNA gene (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB25224 Ruiz-GonzΓ‘lez C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026)
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 SΓ‘nchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)