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Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
Lactic acid bacteria CΓ‘diz (INIA) Food TecnologΓ­a de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓ­a de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in CΓ‘diz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) Human Microbial Ecology, Nutrition and Health Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis 01/02/2021 01/06/2023 False True 0 60 ENA PRJEB104642
V3-V4 16S amplicons from human feces - AXOS intervention (IATA) Human Microbial Ecology, Nutrition and Health Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) 04/08/2014 False True 0 30 ENA PRJEB25727 10.1128/mSystems.00209-19
AQC_EfluentesDepuradoras_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial communities (16S rRNA gene) along experimental river channels at different times, seeded with wastewater treatment plant effluent (Urban River Lab). 27/03/2017 12/09/2018 False False 0 302
AQC_LagosMonegros_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial community assembly along a wide salinity gradient (0.1-40%) in shallow saline ponds of the Monegros Desert. 12/11/2012 30/04/2014 False True 0 274 NCBI SRA PRJNA429605 https://doi.org/10.1038/s41396-019-0454-4
V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Animal Microbial Ecology, Nutrition and Health Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 11/11/2019 False True 0 29 ENA PRJEB66189
V3-V4 16S amplicons from human feces - UCI patients (IATA) Human Microbial Ecology, Nutrition and Health Multi-centre study to assess the intestinal microbiota of ICU patients upon admission and follow-up of those with a sepsis diagnosis 05/06/2017 29/01/2018 False True 0 250 ENA PRJEB33360 10.1080/19490976.2019.1707610
Shotgun sequencing from human feces - caloric restriction intervention (IATA) Human Microbial Ecology, Nutrition and Health Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled False True 0 160 ENA PRJEB36898 10.1002/mnfr.202000996
Styela plicata microbiome - multidimensional variability (CEAB) 92 ascidian samples (gill + gut + tunic Γ— juvenile + adult Γ— 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. Animal Molecular ecology of marine benthos Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations 27/4/20 27/4/20 False True 0 112 NCBI PRJNA982737 10.1016/j.isci.2023.107812
SOIL_RizosferaOlivos_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Nitrifying archaea and bacteria in the rhizosphere of 96 olive orchards and the soil, climate and management factors that shape them. 01/05/2009 31/07/2009 False True 0 146 NCBI SRA PRJNA276257 https://doi.org/10.1371/journal.pone.0125787
PHYL_BosqueEncinasMed_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. 01/08/2016 01/12/2016 False True 0 24 NCBI SRA PRJNA560873 https://doi.org/10.1111/1365-2745.13288
AQC_LagosBanyoles_16S_NovelOTUs (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Novel OTUs (highest novelty plot area) derived from the samples of AQC_LagosBanyoles_16S (CEAB). 08/05/2010 08/05/2010 False True 0 Supplementary material (article) No own accession see article DOI https://doi.org/10.1007/s00248-015-0696-2
Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Nursing homes residents Nursing home residents False False 0 400
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Ulcerative Colitis patiens Oral and fecal microbiome from Ulcerative colitis patients False True 0 21 NCBI PRJNA749643 https://doi.org/10.3390/cimb44040103
AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosBanyoles_DGGE18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Protist diversity in sulfurous karstic lakes and coastal lagoons, from DGGE fingerprinting of 40 water samples. 12/07/1989 10/07/2002 False True 0 108 GenBank AJ862378-AJ862487 https://doi.org/10.1111/1758-2229.12324
AQC_LagosBanyoles_18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Protist diversity in the sulfidic waters of the Banyoles karstic lakes, from 454 pyrotag sequencing of six samples. 10/05/2010 10/05/2010 False True 0 455 GenBank LN735563-LN736017 https://doi.org/10.1111/1758-2229.12324
SOIL_RizosferaOlivos_16S_ArchaeaAbundance (CEAB) Soil Ecology of the Global Microbiome (CEAB) Relative abundance of archaeal groups (16S rRNA gene cloning vs pyrotag) derived from the samples of SOIL_RizosferaOlivos_16S (CEAB). 01/01/2009 31/12/2009 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1371/journal.pone.0125787
SOIL_RizosferaPlantasRaras_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Root-associated bacteria (and aboveground arthropod visitors) of rare plant species in large and small populations. False True 0 81 https://doi.org/10.1016/j.ppees.2026.125930
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/
AIR_MontanaPirineos_16S18S (CEAB) Air Ecology of the Global Microbiome (CEAB) Seasonal patterns of airborne bacteria and eukaryotes in a long time series (2007-2013) in the Pyrenees, and their link to atmospheric circulation. 15/05/2007 15/10/2013 False True 0 274 ENA PRJEB14358 https://doi.org/10.1073/pnas.1812826115
GUT_GanadoAntiparasitarios_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). 17/07/2017 17/07/2017 False True 0 66 NCBI SRA PRJNA515520 https://doi.org/10.1016/j.apsoil.2025.106704
AQC_LagosMonegros_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Shotgun metagenomes of the microbial communities of three Monegros hypersaline lakes sampled over two years. 13/11/2012 23/12/2014 False False 0 41
SOIL_GradienteOrdesa_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Soil microbiota along an altitudinal gradient of Ordesa y Monte Perdido National Park, within a biodiversity monitoring project for global change. False True 0 72
Styela plicata microbiome - spatio-temporal dynamics (CEAB) 5 adults Γ— 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) Γ— 2 compartments (gill, tunic) Γ— 2 harbours β‰ˆ 160 ascidian + β‰ˆ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (GaliΓ -Camps et al. 2023) but deposited separately. Animal Molecular ecology of marine benthos Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations 15/1/20 28/10/21 False True 0 188 NCBI PRJNA1030313 10.1016/j.marpolbul.2024.116477
rrn operon ONT sequencing from human feces - FMT (IATA) Human Microbial Ecology, Nutrition and Health Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation 10/04/2017 False True 0 3 ENA PRJEB33947 10.1101/2020.09.11.292896
Fungal Microbiome of Festuca rubra subsp. pruinosa Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 130 https://doi.org/10.3389/fmicb.2018.03321
Fungal Microbiome of Celtica gigantea Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 27 https://doi.org/10.1016/j.plantsci.2020.110762
V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) Animal Microbial Ecology, Nutrition and Health Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice 01/11/2019 False True 0 50 ENA PRJEB37867 10.1080/19490976.2020.1865706
AQC_LagosBanyoles_Metagenoma_TaxFuncTables (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomic composition and functional processes derived from the metagenomes of AQC_LagosBanyoles_Metagenoma (CEAB). 08/05/2010 09/05/2010 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1038/ismej.2014.254
AQC_LagosBanyoles_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomic diversity and functional potential of the microbial community of the sulfurous lakes CisοΏ½ and Banyoles (basin C-III). 08/05/2010 09/05/2010 False True 0 12 CAMERA CAM_P_0001174 https://doi.org/10.1038/ismej.2014.254
AQC_LagosAlpinos_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). 25/09/2013 25/09/2013 False True 0 2 ENA PRJEB6029 https://doi.org/10.1016/j.scitotenv.2019.135929
BBMO temporal series (BBMO_ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 20/03/2001 False False 0 ENA PRJEB48035
BBMO surface picoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False True 0 ENA PRJEB51979
BBMO 16S rRNA gene pico- & nano-plankton (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 28/01/2003 02/08/2016 False True 0 ENA PRJEB38773
BBMO 18S rRNA gene pico- & nano-plankton (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 26/01/2004 07/06/2016 False True 0 ENA PRJEB23788 Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929)
BBMO MetaGenome nanoplankton (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO SAGs (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO surface nanoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False False 0 ENA PRJEB51979
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Ulcerative Colitis patiens, Nursing homes residents Ulcerative colitis patients False True 0 20 NCBI PRJNA749914 / PRJNA749643 https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103
AQC_LagosAlpinos_Cloning16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Vertical distribution and phylogeny of ammonia-oxidizing archaea in the water column of the deep Lake Redon (Pyrenees). 20/09/2007 17/04/2008 False True 0 162 GenBank HE589603-HE589764 https://doi.org/10.1038/ismej.2012.33