| Malaspina air metagenome raw sequence reads (KAUST) |
|
Air |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA319484 |
|
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48517 |
|
| Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
1 |
|
|
|
ENA |
PRJNA493151 |
|
| Blautia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Clostridia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
2 |
|
|
|
|
|
|
| Bacteria from whey (rennet coagulated milk in the lab) (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
13 |
|
|
|
|
|
|
| Bacteria from Gamoneu cheese rind (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
11 |
|
|
|
|
|
|
| Bacteria from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Bacteria from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
31 |
|
|
|
|
|
|
| Yeast from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
6 |
|
|
|
|
|
|
| Yeast from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Bacteria from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
89 |
|
|
|
|
|
|
| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| Isolates from the human gastrointestinal tract (IPLA) |
|
Human |
MicroHealth, MicroHealth, MicroHealth, MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| MARINHET_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
2001 |
|
|
|
|
|
|
| MARINHET_ICM_ATP09 |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
33 |
|
|
|
|
|
|
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| MARINHET_ICM_MIFASOL |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
245 |
|
|
|
|
|
|
| MARINHET_ICM_Malaspina |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
Malaspina Expedition, MARINHET |
|
|
|
|
False |
False |
343 |
|
|
|
|
|
|
| MARINHET_ICM_Tara |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
True |
False |
1246 |
|
|
|
|
|
|
| Fungal Microbiome of Festuca rubra subsp. pruinosa |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
130 |
|
|
|
|
|
https://doi.org/10.3389/fmicb.2018.03321 |
| Fungal Microbiome of Celtica gigantea |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
27 |
|
|
|
|
|
https://doi.org/10.1016/j.plantsci.2020.110762 |
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol (ICM) |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol (ICM) |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
|
Aquatic |
EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| AIR_MontanaMontseny_BacterialAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AIR_MontanaMontseny_EukaryalAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Eukaryal air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
|
|
GenBank |
HE598566-HE598696 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_FunctionalGenes (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Abundance of C, N, S and P cycling marker genes (KEGG), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosBanyoles_16S_NovelOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Novel OTUs (highest novelty plot area) derived from the samples of AQC_LagosBanyoles_16S (CEAB). |
|
08/05/2010 |
08/05/2010 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession see article DOI |
https://doi.org/10.1007/s00248-015-0696-2 |
| AQC_LagosBanyoles_Metagenoma_TaxFuncTables (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomic composition and functional processes derived from the metagenomes of AQC_LagosBanyoles_Metagenoma (CEAB). |
|
08/05/2010 |
09/05/2010 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1038/ismej.2014.254 |
| AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). |
|
|
|
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1574-6941.12095 |
| AQC_RiosMontseny_16S_2024 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. |
|
19/04/2021 |
12/05/2021 |
False |
True |
0 |
|
|
|
NCBI SRA |
PRJNA1131982 |
https://doi.org/10.1029/2024JG008346 |
| GUT_LinceIberico_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. |
|
|
|
False |
False |
0 |
|
|
|
NCBI SRA |
PRJNA1481532 |
|
| SOIL_RizosferaOlivos_16S_ArchaeaAbundance (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Relative abundance of archaeal groups (16S rRNA gene cloning vs pyrotag) derived from the samples of SOIL_RizosferaOlivos_16S (CEAB). |
|
01/01/2009 |
31/12/2009 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1371/journal.pone.0125787 |
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
