| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB52452 |
SΓ‘nchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1) |
| AQC_LagosBanyoles_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial diversity and novelty in the deep sulfurous waters of three lakes of the Banyoles karstic area. |
|
08/05/2010 |
08/05/2010 |
False |
True |
0 |
|
18 |
|
ENA |
PRJEB5429 |
https://doi.org/10.1007/s00248-015-0696-2 |
| AQC_LagosAlpinos_Metagenoma (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
2 |
|
ENA |
PRJEB6029 |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 |
|
11/11/2019 |
|
False |
True |
0 |
|
29 |
|
ENA |
PRJEB66189 |
|
| V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota |
|
01/02/2022 |
|
False |
True |
0 |
|
56 |
|
ENA |
PRJEB71610 |
|
| rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives |
|
01/04/2022 |
|
False |
True |
0 |
|
6 |
|
ENA |
PRJEB74092 |
|
| Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB76155 |
|
| Malaspina diversity of deep microbial eukaryotes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB9943 |
|
| AIR_MontanaMontseny_16S18S (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne bacteria and eukaryotes collected over almost three decades at a Montseny mountain station, and the influence of North African desert dust. |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
194 |
|
NCBI SRA |
PRJNA1004844 |
https://doi.org/10.1111/1462-2920.70046 |
| Styela plicata microbiome - spatio-temporal dynamics (CEAB) |
5 adults Γ 8 timepoints (Jan/Apr/Jul/Oct 2020β2021) Γ 2 compartments (gill, tunic) Γ 2 harbours β 160 ascidian + β 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (GaliΓ -Camps et al. 2023) but deposited separately. |
Animal |
Molecular ecology of marine benthos |
|
Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020βOct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
|
15/1/20 |
28/10/21 |
False |
True |
0 |
|
188 |
|
NCBI |
PRJNA1030313 |
10.1016/j.marpolbul.2024.116477 |
| GUT_Conejo_16S_2025 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. |
|
01/11/2019 |
01/02/2021 |
False |
True |
0 |
|
105 |
|
NCBI SRA |
PRJNA1031537 |
https://doi.org/10.1016/j.vetmic.2025.110688 |
| Malaspina Mesozooplankon (AZTI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA1033987 |
|
| Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
SARS-CoV-2 patients |
SARS-CoV-2 patients |
|
|
|
False |
True |
0 |
|
28 |
|
SRA |
PRJNA1099539 |
https://pubmed.ncbi.nlm.nih.gov/39744158/ |
| AQC_RiosMontseny_16S_2024 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. |
|
19/04/2021 |
12/05/2021 |
False |
True |
0 |
|
|
|
NCBI SRA |
PRJNA1131982 |
https://doi.org/10.1029/2024JG008346 |
| GUT_Liebre_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian hares living in organic and conventional farmland. |
|
21/10/2018 |
26/01/2019 |
False |
True |
0 |
|
148 |
|
NCBI SRA |
PRJNA1168362 |
https://doi.org/10.1016/j.envpol.2025.125862 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| GUT_LinceIberico_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. |
|
|
|
False |
False |
0 |
|
|
|
NCBI SRA |
PRJNA1481532 |
|
| SOIL_RizosferaOlivos_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Nitrifying archaea and bacteria in the rhizosphere of 96 olive orchards and the soil, climate and management factors that shape them. |
|
01/05/2009 |
31/07/2009 |
False |
True |
0 |
|
146 |
|
NCBI SRA |
PRJNA276257 |
https://doi.org/10.1371/journal.pone.0125787 |
| Malaspina air metagenome raw sequence reads (KAUST) |
|
Air |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA319484 |
|
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
| Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139 |
|
| AQC_LagosAlpinos_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
304 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1111/1462-2920.14848 |
| AQC_LagosAlpinos_18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
227 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1038/s41598-018-22835-3 |
| SOIL_MonegrosGallocanta_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. |
|
07/10/2010 |
17/07/2014 |
False |
True |
0 |
|
34 |
|
NCBI SRA |
PRJNA420947 |
https://doi.org/10.1016/j.scitotenv.2018.09.050 |
| AQC_LagosMonegros_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Microbial community assembly along a wide salinity gradient (0.1-40%) in shallow saline ponds of the Monegros Desert. |
|
12/11/2012 |
30/04/2014 |
False |
True |
0 |
|
274 |
|
NCBI SRA |
PRJNA429605 |
https://doi.org/10.1038/s41396-019-0454-4 |
| Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
1 |
|
|
|
ENA |
PRJNA493151 |
|
| AIR_MontanaSierraNevada_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. |
|
21/06/2006 |
07/10/2008 |
False |
True |
0 |
|
54 |
|
NCBI SRA |
PRJNA509787 |
https://doi.org/10.1016/j.atmosenv.2019.01.038 |
| GUT_GanadoAntiparasitarios_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). |
|
17/07/2017 |
17/07/2017 |
False |
True |
0 |
|
66 |
|
NCBI SRA |
PRJNA515520 |
https://doi.org/10.1016/j.apsoil.2025.106704 |
| PHYL_BosqueEncinasMed_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Nitrifying microbes on tree canopies and their contribution to nitrate fluxes in a Mediterranean holm oak forest. |
|
01/08/2016 |
01/12/2016 |
False |
True |
0 |
|
24 |
|
NCBI SRA |
PRJNA560873 |
https://doi.org/10.1111/1365-2745.13288 |
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Metabolic syndrome-Cardiovascular disease patients |
Individuals at cardiovascular risk and healthy subjects |
|
|
|
False |
True |
0 |
|
32 |
|
NCBI |
PRJNA717111 |
https://doi.org/10.1039/D1FO03942C |
| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA736051 |
|
| Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Ulcerative Colitis patiens |
Oral and fecal microbiome from Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
21 |
|
NCBI |
PRJNA749643 |
https://doi.org/10.3390/cimb44040103 |
| Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, AlimentaciΓ³n y Salud (BEA) |
Ulcerative Colitis patiens, Nursing homes residents |
Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
20 |
|
NCBI |
PRJNA749914 /
PRJNA749643 |
https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103 |
| PHYL_BosquesHayaPino_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. |
|
01/01/2016 |
31/12/2017 |
False |
True |
0 |
|
45 |
|
NCBI SRA |
PRJNA859654 |
https://doi.org/10.1038/s41561-023-01364-3 |
| AQC_RiosMontseny_16S_2022 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). |
|
28/03/2019 |
20/02/2020 |
False |
True |
0 |
|
86 |
|
NCBI SRA |
PRJNA881938 |
https://doi.org/10.1111/fwb.14152 |
| GUT_Jabali_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild boar in Spain and its relation to population management. |
|
18/10/2019 |
01/02/2020 |
False |
True |
0 |
|
88 |
|
NCBI SRA |
PRJNA886492 |
https://doi.org/10.1016/j.micres.2023.127444 |
| Styela plicata microbiome - multidimensional variability (CEAB) |
92 ascidian samples (gill + gut + tunic Γ juvenile + adult Γ 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. |
Animal |
Molecular ecology of marine benthos |
|
Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations |
|
27/4/20 |
27/4/20 |
False |
True |
0 |
|
112 |
|
NCBI |
PRJNA982737 |
10.1016/j.isci.2023.107812 |
| GUT_Conejo_16S_2020 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. |
|
|
|
False |
True |
0 |
|
126 |
|
NCBI SRA / MGnify |
SRP129755 |
https://doi.org/10.1038/s41598-020-80782-4 |
