| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1002/mnfr.201600620 |
| Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
1 |
|
|
|
https://doi.org/10.1021/jf402816r |
| Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1021/jf4025135 |
| GUT_AnelidosArticos_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. |
|
|
|
False |
True |
0 |
|
128 |
|
GenBank |
LM999772-LM999899 |
https://doi.org/10.1111/1365-2656.12563 |
| V3-V4 16S amplicons from human feces - newborns with CeD (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota trajectory in early life may predict development of celiac disease |
|
|
|
False |
True |
0 |
|
39 |
|
ENA |
PRJEB23313 |
10.1186/s40168-018-0415-6 |
| GUT_Conejo_16S_2020 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. |
|
|
|
False |
True |
0 |
|
126 |
|
NCBI SRA / MGnify |
SRP129755 |
https://doi.org/10.1038/s41598-020-80782-4 |
| GUT_Conejo_16S_2025 (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. |
|
01/11/2019 |
01/02/2021 |
False |
True |
0 |
|
105 |
|
NCBI SRA |
PRJNA1031537 |
https://doi.org/10.1016/j.vetmic.2025.110688 |
| GUT_Jabali_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of wild boar in Spain and its relation to population management. |
|
18/10/2019 |
01/02/2020 |
False |
True |
0 |
|
88 |
|
NCBI SRA |
PRJNA886492 |
https://doi.org/10.1016/j.micres.2023.127444 |
| V3-V4 16S amplicons from human feces - obese+IR children (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening |
|
01/03/2013 |
|
False |
True |
0 |
|
51 |
|
ENA |
PRJEB37005 |
10.1128/mSystems.00857-19 |
| GUT_Ciervo_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian red deer in relation to physiological stress, reproductive cycle and hunting management in Sierra Morena. |
|
20/10/2020 |
05/02/2022 |
False |
False |
0 |
|
224 |
|
|
|
|
| GUT_LinceIberico_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. |
|
|
|
False |
False |
0 |
|
|
|
NCBI SRA |
PRJNA1481532 |
|
| GUT_Liebre_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut microbiota of Iberian hares living in organic and conventional farmland. |
|
21/10/2018 |
26/01/2019 |
False |
True |
0 |
|
148 |
|
NCBI SRA |
PRJNA1168362 |
https://doi.org/10.1016/j.envpol.2025.125862 |
| rrn operon ONT sequencing from human feces - COVID patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection |
|
01/10/2020 |
|
False |
True |
0 |
|
119 |
|
ENA |
PRJEB102567 |
|
| GUT_Artemia_DGGE16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. |
|
|
|
False |
True |
0 |
|
37 |
|
GenBank |
LK391468-LK391504 |
https://doi.org/10.1007/s00792-014-0694-1 |
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| AQC_LagosAlpinos_Cloning18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Genetic diversity of planktonic eukaryotes in 11 high-mountain lakes of the Central Pyrenees. |
|
01/07/2008 |
31/07/2008 |
False |
True |
0 |
|
343 |
|
GenBank |
HE655089-HE655431 |
https://doi.org/10.1111/j.1462-2920.2012.02797.x |
| AQC_LagosHipersalinosChile_DGGE16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. |
|
|
|
False |
True |
0 |
|
46 |
|
GenBank |
LK391422-LK391467 |
https://doi.org/10.1007/s00792-014-0694-1 |
| V3-V4 16S amplicons from rats - probiotic safety assay (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 |
|
30/11/2017 |
|
False |
True |
0 |
|
42 |
|
ENA |
PRJEB35764 |
10.3390/nu12020551 |
| V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota |
|
01/02/2022 |
|
False |
True |
0 |
|
56 |
|
ENA |
PRJEB71610 |
|
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| AIR_MontanaMontseny_EukaryalAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Eukaryal air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AQC_RiosMontseny_16S_2022 (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). |
|
28/03/2019 |
20/02/2020 |
False |
True |
0 |
|
86 |
|
NCBI SRA |
PRJNA881938 |
https://doi.org/10.1111/fwb.14152 |
| AQC_LagosAlpinos_18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
227 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1038/s41598-018-22835-3 |
| AQC_LagosMonegros_DGGE18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity and novelty of planktonic protists in 34 coastal and inland saline ponds of Spain and Chile. |
|
01/05/1992 |
30/06/2005 |
False |
True |
0 |
|
114 |
|
GenBank |
AM072914-AM072938, AM084278-AM084326, AM087460-AM087468, AM179805-AM179824, AM231690-AM231700 |
https://doi.org/10.1111/1574-6941.12095 |
| PHYL_BosquesHayaPino_16S (CEAB) |
|
Plants |
Ecology of the Global Microbiome (CEAB) |
|
Contribution of nitrifiers on beech and pine canopies to nitrogen fluxes in European forests. |
|
01/01/2016 |
31/12/2017 |
False |
True |
0 |
|
45 |
|
NCBI SRA |
PRJNA859654 |
https://doi.org/10.1038/s41561-023-01364-3 |
| SOIL_MonegrosGallocanta_16S (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. |
|
07/10/2010 |
17/07/2014 |
False |
True |
0 |
|
34 |
|
NCBI SRA |
PRJNA420947 |
https://doi.org/10.1016/j.scitotenv.2018.09.050 |
| AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). |
|
|
|
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1574-6941.12095 |
| Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. |
Animal |
Molecular ecology of marine benthos |
|
Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
4323 |
|
Other |
|
10.3389/fmars.2020.00201 |
| AQC_LagosAlpinos_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
304 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1111/1462-2920.14848 |
| AQC_LagosMonegros_DGGE16S18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial, archaeal and eukaryal diversity and novelty in saline shallow lakes of the Monegros Desert, in winter and spring. |
|
21/12/2004 |
25/05/2005 |
False |
True |
0 |
|
80 |
|
GenBank |
AM071495-AM071509, AM072914, AM072916-AM072918, AM072920-AM072921, AM072923, AM072928, AM072930, AM072932-AM072939, AM085949-AM085957, AM085959-AM085962, AM085964, AM085966-AM085969, AM085971, AM085973-AM085974, AM085976-AM085993, AM087460-AM087468 |
https://doi.org/10.1111/1574-6941.12139 |
| AQC_LagosBanyoles_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial diversity and novelty in the deep sulfurous waters of three lakes of the Banyoles karstic area. |
|
08/05/2010 |
08/05/2010 |
False |
True |
0 |
|
18 |
|
ENA |
PRJEB5429 |
https://doi.org/10.1007/s00248-015-0696-2 |
| AIR_MontanaSierraNevada_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. |
|
21/06/2006 |
07/10/2008 |
False |
True |
0 |
|
54 |
|
NCBI SRA |
PRJNA509787 |
https://doi.org/10.1016/j.atmosenv.2019.01.038 |
| AIR_MetroBarcelona_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition and abundance of airborne particles inside trains, on platforms and in lobbies of the Barcelona subway over four months. |
|
18/11/2013 |
11/02/2014 |
False |
True |
0 |
|
136 |
|
GenBank |
LT158063-LT158198 |
https://doi.org/10.1111/ina.12343 |
| AIR_MontanaMontseny_BacterialAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AQC_LagosAlpinosNeuston_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacteria and archaea of the surface microlayer (neuston) and the underlying plankton in three Pyrenean lakes under two atmospheric aerosol conditions. |
|
18/09/2007 |
12/11/2007 |
False |
True |
0 |
|
12 |
|
CAMERA |
CAM_P_0000910 |
https://doi.org/10.1111/1574-6941.12068 |
| AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
|
|
GenBank |
HE598566-HE598696 |
https://doi.org/10.1038/ismej.2012.33 |
| Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Early Alzheimer patients |
Alzheimer patients |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| AIR_ValleEbro_Metagenoma (CEAB) |
|
Soil, Aquatic, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne microbial metagenomes of the steppe and mountain areas of the Ebro Valley and their potential source environments (DRYLANDS project). |
|
03/02/2026 |
03/06/2026 |
False |
False |
0 |
|
25 |
|
|
|
|
| AIR_ValleEbro_16S (CEAB) |
|
Soil, Aquatic, Plants, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne microbial communities (16S rRNA gene) of the steppe and mountain areas of the Ebro Valley and their potential source environments (DRYLANDS project). |
|
03/02/2026 |
03/06/2026 |
False |
False |
0 |
|
83 |
|
|
|
|
| AIR_MontanaMontseny_16S18S (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Airborne bacteria and eukaryotes collected over almost three decades at a Montseny mountain station, and the influence of North African desert dust. |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
194 |
|
NCBI SRA |
PRJNA1004844 |
https://doi.org/10.1111/1462-2920.70046 |
| AQC_LagosAlpinos_Metagenoma_FunctionalGenes (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Abundance of C, N, S and P cycling marker genes (KEGG), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| Lactic acid bacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Bifidobacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
16 |
|
|
|
|
|
|
| Streptococcus (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Healthy children metataxonomies (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Human adult metagenomes (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Food metagenomes (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Colección de Hongos Micorrícicos Arbusculares (EEZ) |
|
Soil |
EEZ-Mycorrhizal Ecology Lab |
Arbuscular Mycorrhizal Fungi |
|
|
|
|
False |
False |
210 |
|
|
|
|
|
|
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
