| Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1021/jf4025135 |
| Human adult metagenomes (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Healthy children metataxonomies (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| Fungal Microbiome of Festuca rubra subsp. pruinosa |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
130 |
|
|
|
|
|
https://doi.org/10.3389/fmicb.2018.03321 |
| Fungal Microbiome of Celtica gigantea |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
27 |
|
|
|
|
|
https://doi.org/10.1016/j.plantsci.2020.110762 |
| Food metagenomes (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
True |
0 |
|
|
|
SRA |
|
|
| EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 |
Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035) |
| Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. |
Animal |
Molecular ecology of marine benthos |
|
Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
4323 |
|
Other |
|
10.3389/fmars.2020.00201 |
| Didemnum vexillum microbiome - global survey (CEAB) |
70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
Animal |
Molecular ecology of marine benthos |
|
Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
120 |
|
NCBI |
PRJNA608680 |
10.3389/fmars.2020.00201 |
| Colección de Hongos Micorrícicos Arbusculares (EEZ) |
|
Terrestrial |
EEZ-Mycorrhizal Ecology Lab |
Arbuscular Mycorrhizal Fungi |
|
|
|
|
False |
False |
210 |
|
|
|
|
|
|
| Clostridia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
2 |
|
|
|
|
|
|
| Blautia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Bifidobacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
16 |
|
|
|
|
|
|
| BBMO Viromes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO SAGs (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO RNA_extraction (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO MetaGenome nanoplankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| Bacteria from whey (rennet coagulated milk in the lab) (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
13 |
|
|
|
|
|
|
| Bacteria from Gamoneu cheese rind (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
11 |
|
|
|
|
|
|
| Bacteria from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Bacteria from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
31 |
|
|
|
|
|
|
| Bacteria from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
89 |
|
|
|
|
|
|
| Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Early Alzheimer patients |
Alzheimer patients |
|
|
|
False |
False |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
False |
False |
0 |
|
|
|
|
|
|
