Contacto
CSIC Microbioma Hub

Colecciones

Limpiar
Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB36469 Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147)
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)
Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45015
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJNA330770
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 SΓ‘nchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)
Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB46335
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB76155
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB44456
Malaspina diversity of deep microbial eukaryotes (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB9943
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJNA736051
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45014
Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45011
Malaspina air metagenome raw sequence reads (KAUST) Air Malaspina Expedition False True 0 ENA PRJNA319484
Malaspina 16S rDNA size-fractions (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB27154
Lactic acid bacteria MΓ‘laga (INIA) Food TecnologΓ­a de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓ­a de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from MΓ‘laga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria CΓ‘diz (INIA) Food TecnologΓ­a de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓ­a de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in CΓ‘diz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria (IPLA) Human MicroHealth True False 9
Isolates from the human gastrointestinal tract (IPLA) Human MicroHealth, MicroHealth, MicroHealth, MicroHealth False False 34
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Metabolic syndrome-Cardiovascular disease patients Individuals at cardiovascular risk and healthy subjects False True 0 32 NCBI PRJNA717111 https://doi.org/10.1039/D1FO03942C
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/
Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1021/jf4025135
Human adult metagenomes (IPLA) Human MicroHealth False True 0 SRA
Healthy children metataxonomies (IPLA) Human MicroHealth False True 0 SRA
GUT_LinceIberico_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. False False 0 NCBI SRA PRJNA1481532
GUT_Liebre_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian hares living in organic and conventional farmland. 21/10/2018 26/01/2019 False True 0 148 NCBI SRA PRJNA1168362 https://doi.org/10.1016/j.envpol.2025.125862
GUT_Jabali_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild boar in Spain and its relation to population management. 18/10/2019 01/02/2020 False True 0 88 NCBI SRA PRJNA886492 https://doi.org/10.1016/j.micres.2023.127444
GUT_GanadoAntiparasitarios_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). 17/07/2017 17/07/2017 False True 0 66 NCBI SRA PRJNA515520 https://doi.org/10.1016/j.apsoil.2025.106704
GUT_Conejo_16S_2025 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits during haemorrhagic disease outbreaks in Spain and Morocco. 01/11/2019 01/02/2021 False True 0 105 NCBI SRA PRJNA1031537 https://doi.org/10.1016/j.vetmic.2025.110688
GUT_Conejo_16S_2020 (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild European rabbits, in the field and in captivity, and its link to host and environmental factors. False True 0 126 NCBI SRA / MGnify SRP129755 https://doi.org/10.1038/s41598-020-80782-4
GUT_Ciervo_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian red deer in relation to physiological stress, reproductive cycle and hunting management in Sierra Morena. 20/10/2020 05/02/2022 False False 0 224
GUT_Artemia_DGGE16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. False True 0 37 GenBank LK391468-LK391504 https://doi.org/10.1007/s00792-014-0694-1
GUT_AnelidosArticos_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. False True 0 128 GenBank LM999772-LM999899 https://doi.org/10.1111/1365-2656.12563
Fungal Microbiome of Festuca rubra subsp. pruinosa Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 130 https://doi.org/10.3389/fmicb.2018.03321
Fungal Microbiome of Celtica gigantea Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 27 https://doi.org/10.1016/j.plantsci.2020.110762
Food metagenomes (IPLA) Food MicroHealth False True 0 SRA
EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) Aquatic Malaspina Expedition False True 0 ENA PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035)
Didemnum vexillum microbiome - global survey ZOTUs (CEAB) Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows β€” this collection documents the ZOTU table as a whole. Animal Molecular ecology of marine benthos Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries 1/1/15 31/12/16 False True 0 4323 Other 10.3389/fmars.2020.00201
Didemnum vexillum microbiome - global survey (CEAB) 70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. Animal Molecular ecology of marine benthos Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups 1/1/15 31/12/16 False True 0 120 NCBI PRJNA608680 10.3389/fmars.2020.00201
ColecciΓ³n de Hongos MicorrΓ­cicos Arbusculares (EEZ) Soil EEZ-Mycorrhizal Ecology Lab Arbuscular Mycorrhizal Fungi False False 210
Clostridia (IPLA) Human MicroHealth False False 2
Blautia (IPLA) Human MicroHealth False False 3
Bifidobacteria (IPLA) Human MicroHealth True False 16
BBMO temporal series (BBMO_ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 20/03/2001 False False 0 ENA PRJEB48035
BBMO surface picoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False True 0 ENA PRJEB51979
BBMO surface nanoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False False 0 ENA PRJEB51979
BBMO SAGs (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO MetaGenome nanoplankton (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO 18S rRNA gene pico- & nano-plankton (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 26/01/2004 07/06/2016 False True 0 ENA PRJEB23788 Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929)