| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| Lactic acid bacteria Málaga (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga |
|
14/06/2011 |
18/10/2011 |
True |
False |
19 |
|
10 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| Lactic acid bacteria Cádiz (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria isolated from raw milk cheeses in Cádiz |
|
14/06/2012 |
13/11/2012 |
True |
False |
0 |
|
12 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| BBMO surface picoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
True |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| BBMO MetaGenome nanoplankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| BBMO SAGs (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
|
|
False |
True |
0 |
|
|
|
|
|
|
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA330770 |
|
| Malaspina diversity of deep microbial eukaryotes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB9943 |
|
| Malaspina 16S rDNA size-fractions (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB27154 |
|
| Malaspina surface picoplankton 18S rRNA gene (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23913 |
|
| Malaspina surface picoplankton 16S rRNA gene (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB25224 |
Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026) |
| Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB36469 |
Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147) |
| Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23771 |
Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9) |
| Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB44456 |
|
| Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB76155 |
|
| EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 |
Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035) |
| Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139 |
|
| Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB52452 |
Sánchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1) |
| Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45015 |
|
| Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45014 |
|
| Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45011 |
|
| Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB46335 |
|
| Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA736051 |
|
| Malaspina Mesozooplankon (AZTI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA1033987 |
|
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48517 |
|
| Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
1 |
|
|
|
ENA |
PRJNA493151 |
|
| MARINHET_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
2001 |
|
|
|
|
|
|
| MARINHET_ICM_ATP09 |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
33 |
|
|
|
|
|
|
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| MARINHET_ICM_MIFASOL |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
False |
False |
245 |
|
|
|
|
|
|
| MARINHET_ICM_Malaspina |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
Malaspina Expedition, MARINHET |
|
|
|
|
False |
False |
343 |
|
|
|
|
|
|
| MARINHET_ICM_Tara |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas (ICM) |
MARINHET |
|
|
|
|
True |
False |
1246 |
|
|
|
|
|
|
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol (ICM) |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| BBMO surface nanoplankton metagenomes (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2023 |
False |
False |
0 |
|
|
|
ENA |
PRJEB51979 |
|
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol (ICM) |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
|
Aquatic |
EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
| AQC_EfluentesDepuradoras_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Microbial communities (16S rRNA gene) along experimental river channels at different times, seeded with wastewater treatment plant effluent (Urban River Lab). |
|
27/03/2017 |
12/09/2018 |
False |
False |
0 |
|
302 |
|
|
|
|
| AQC_LagosAlpinosNeuston_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacteria and archaea of the surface microlayer (neuston) and the underlying plankton in three Pyrenean lakes under two atmospheric aerosol conditions. |
|
18/09/2007 |
12/11/2007 |
False |
True |
0 |
|
12 |
|
CAMERA |
CAM_P_0000910 |
https://doi.org/10.1111/1574-6941.12068 |
| AQC_LagosAlpinos_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
304 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1111/1462-2920.14848 |
| AQC_LagosAlpinos_18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. |
|
01/07/2011 |
20/09/2011 |
False |
True |
0 |
|
227 |
|
NCBI SRA |
PRJNA413654 |
https://doi.org/10.1038/s41598-018-22835-3 |
| AQC_LagosAlpinos_Cloning16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Vertical distribution and phylogeny of ammonia-oxidizing archaea in the water column of the deep Lake Redon (Pyrenees). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
162 |
|
GenBank |
HE589603-HE589764 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
|
|
GenBank |
HE598566-HE598696 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Cloning18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Genetic diversity of planktonic eukaryotes in 11 high-mountain lakes of the Central Pyrenees. |
|
01/07/2008 |
31/07/2008 |
False |
True |
0 |
|
343 |
|
GenBank |
HE655089-HE655431 |
https://doi.org/10.1111/j.1462-2920.2012.02797.x |
| AQC_LagosAlpinos_Metagenoma (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
2 |
|
ENA |
PRJEB6029 |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
