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Nombre Notas Biomas Grupos de investigación Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos ómicos Nº Aislados Nº Metagenomas Nº Muestras Análisis genómico Repositorio Accession ID Publicaciones
BBMO surface nanoplankton metagenomes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False False 0 ENA PRJEB51979
REMEI (ICM) Aquatic Ecology of Marine Microbes False False 1643
False False 0
Styela plicata microbiome - multidimensional variability (CEAB) 92 ascidian samples (gill + gut + tunic × juvenile + adult × 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (Galià-Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. Animal Molecular ecology of marine benthos Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations 27/4/20 27/4/20 False True 0 112 NCBI PRJNA982737 10.1016/j.isci.2023.107812
Styela plicata microbiome - spatio-temporal dynamics (CEAB) 5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià-Camps et al. 2023) but deposited separately. Animal Molecular ecology of marine benthos Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations 15/1/20 28/10/21 False True 0 188 NCBI PRJNA1030313 10.1016/j.marpolbul.2024.116477
Didemnum vexillum microbiome - global survey (CEAB) 70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. Animal Molecular ecology of marine benthos Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups 1/1/15 31/12/16 False True 0 120 NCBI PRJNA608680 10.3389/fmars.2020.00201
Didemnum vexillum microbiome - global survey ZOTUs (CEAB) Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. Animal Molecular ecology of marine benthos Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries 1/1/15 31/12/16 False True 0 4323 Other 10.3389/fmars.2020.00201
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)
BBMO 18S rRNA gene pico- & nano-plankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 26/01/2004 07/06/2016 False True 0 ENA PRJEB23788 Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929)
Lactic acid bacteria Málaga (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria Cádiz (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in Cádiz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Tick metataxonomies Animal SabiO-Microbioomics Lab Host specificity and network structure of tick microbiota False True 0 46 SRA PRJNA1270924 https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI)
Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1002/mnfr.201600620
Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Ulcerative Colitis patiens, Nursing homes residents Ulcerative colitis patients False True 0 20 NCBI PRJNA749914 / PRJNA749643 https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103
Fungal Microbiome of Celtica gigantea Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 27 https://doi.org/10.1016/j.plantsci.2020.110762
Tick Metataxonomies (5 pooled samples) Animal SabiO-Microbioomics Lab Exploring tick microbiota of Hyalomma lusitanicum False True 0 5 pooled samples SRA PRJNA681858 https://doi.org/10.1016/j.ttbdis.2020.101624
Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1021/jf4025135
Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 1 https://doi.org/10.1021/jf402816r
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Metabolic syndrome-Cardiovascular disease patients Individuals at cardiovascular risk and healthy subjects False True 0 32 NCBI PRJNA717111 https://doi.org/10.1039/D1FO03942C
Fungal Microbiome of Festuca rubra subsp. pruinosa Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 130 https://doi.org/10.3389/fmicb.2018.03321
Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Ulcerative Colitis patiens Oral and fecal microbiome from Ulcerative colitis patients False True 0 21 NCBI PRJNA749643 https://doi.org/10.3390/cimb44040103
Microbial metabolism and intestinal barrier Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals and patients False True 0 1 NCBI PRJNA731070 https://doi.org/10.3390/microorganisms9071378
Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) Aquatic Ecology of Marine Microbes - LOGLAB False False 0 ZENODO https://doi.org/10.5281/zenodo.17159964
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/
EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) Aquatic Malaspina Expedition False True 0 ENA PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035)
Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB36469 Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147)
Malaspina surface picoplankton 16S rRNA gene (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB25224 Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026)
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 Sánchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)