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Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
False False 0
rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) Human Microbial Ecology, Nutrition and Health Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives 01/04/2022 False True 0 6 ENA PRJEB74092
rrn operon ONT sequencing from human feces - COVID patients (IATA) Human Microbial Ecology, Nutrition and Health Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection 01/10/2020 False True 0 119 ENA PRJEB102567
V3-V4 16S amplicons from human feces - Wilson Disease (IATA) Human Microbial Ecology, Nutrition and Health Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis 01/02/2021 01/06/2023 False True 0 60 ENA PRJEB104642
V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) Animal Microbial Ecology, Nutrition and Health Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota 01/02/2022 False True 0 56 ENA PRJEB71610
V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) Animal Microbial Ecology, Nutrition and Health Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 11/11/2019 False True 0 62 ENA PRJEB46294
V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) Animal Microbial Ecology, Nutrition and Health Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 11/11/2019 False True 0 29 ENA PRJEB66189
False False 0
AIR_ValleEbro_16S (CEAB) Soil, Aquatic, Plants, Air Ecology of the Global Microbiome (CEAB) Airborne microbial communities (16S rRNA gene) of the steppe and mountain areas of the Ebro Valley and their potential source environments (DRYLANDS project). 03/02/2026 03/06/2026 False False 0 83
AIR_ValleEbro_Metagenoma (CEAB) Soil, Aquatic, Air Ecology of the Global Microbiome (CEAB) Airborne microbial metagenomes of the steppe and mountain areas of the Ebro Valley and their potential source environments (DRYLANDS project). 03/02/2026 03/06/2026 False False 0 25
AQC_EfluentesDepuradoras_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial communities (16S rRNA gene) along experimental river channels at different times, seeded with wastewater treatment plant effluent (Urban River Lab). 27/03/2017 12/09/2018 False False 0 302
AQC_LagosMonegros_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Shotgun metagenomes of the microbial communities of three Monegros hypersaline lakes sampled over two years. 13/11/2012 23/12/2014 False False 0 41
GUT_Ciervo_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian red deer in relation to physiological stress, reproductive cycle and hunting management in Sierra Morena. 20/10/2020 05/02/2022 False False 0 224
GUT_LinceIberico_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian lynx in the ex-situ conservation breeding programme. False False 0 NCBI SRA PRJNA1481532
SOIL_GradienteOrdesa_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Soil microbiota along an altitudinal gradient of Ordesa y Monte Perdido National Park, within a biodiversity monitoring project for global change. False True 0 72
False False 0
Shotgun sequencing from human feces - caloric restriction intervention (IATA) Human Microbial Ecology, Nutrition and Health Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled False True 0 160 ENA PRJEB36898 10.1002/mnfr.202000996
Styela plicata microbiome - multidimensional variability (CEAB) 92 ascidian samples (gill + gut + tunic Γ— juvenile + adult Γ— 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (GaliΓ -Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. Animal Molecular ecology of marine benthos Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations 27/4/20 27/4/20 False True 0 112 NCBI PRJNA982737 10.1016/j.isci.2023.107812
Styela plicata microbiome - spatio-temporal dynamics (CEAB) 5 adults Γ— 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) Γ— 2 compartments (gill, tunic) Γ— 2 harbours β‰ˆ 160 ascidian + β‰ˆ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (GaliΓ -Camps et al. 2023) but deposited separately. Animal Molecular ecology of marine benthos Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations 15/1/20 28/10/21 False True 0 188 NCBI PRJNA1030313 10.1016/j.marpolbul.2024.116477
V3-V4 16S amplicons from human feces - UCI patients (IATA) Human Microbial Ecology, Nutrition and Health Multi-centre study to assess the intestinal microbiota of ICU patients upon admission and follow-up of those with a sepsis diagnosis 05/06/2017 29/01/2018 False True 0 250 ENA PRJEB33360 10.1080/19490976.2019.1707610
V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) Animal Microbial Ecology, Nutrition and Health Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice 01/11/2019 False True 0 50 ENA PRJEB37867 10.1080/19490976.2020.1865706
V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) Animal Microbial Ecology, Nutrition and Health Holdemanella biformis improves glucose tolerance via GLP-1 signalling in diet-induced obese mice 01/06/2018 False True 0 28 ENA PRJEB38356 10.1096/fj.202100126R
rrn operon ONT sequencing from human feces - FMT (IATA) Human Microbial Ecology, Nutrition and Health Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation 10/04/2017 False True 0 3 ENA PRJEB33947 10.1101/2020.09.11.292896
V3-V4 16S amplicons from human feces - AXOS intervention (IATA) Human Microbial Ecology, Nutrition and Health Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) 04/08/2014 False True 0 30 ENA PRJEB25727 10.1128/mSystems.00209-19
V3-V4 16S amplicons from human feces - obese+IR children (IATA) Human Microbial Ecology, Nutrition and Health Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening 01/03/2013 False True 0 51 ENA PRJEB37005 10.1128/mSystems.00857-19
V3-V4 16S amplicons from human feces - newborns with CeD (IATA) Human Microbial Ecology, Nutrition and Health Gut microbiota trajectory in early life may predict development of celiac disease False True 0 39 ENA PRJEB23313 10.1186/s40168-018-0415-6
Didemnum vexillum microbiome - global survey (CEAB) 70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. Animal Molecular ecology of marine benthos Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups 1/1/15 31/12/16 False True 0 120 NCBI PRJNA608680 10.3389/fmars.2020.00201
Didemnum vexillum microbiome - global survey ZOTUs (CEAB) Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows β€” this collection documents the ZOTU table as a whole. Animal Molecular ecology of marine benthos Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries 1/1/15 31/12/16 False True 0 4323 Other 10.3389/fmars.2020.00201
V3-V4 16S amplicons from rats - probiotic safety assay (IATA) Animal Microbial Ecology, Nutrition and Health Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 30/11/2017 False True 0 42 ENA PRJEB35764 10.3390/nu12020551
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic EMM - LOGLAB (ICM) Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)
BBMO 18S rRNA gene pico- & nano-plankton (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 26/01/2004 07/06/2016 False True 0 ENA PRJEB23788 Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929)
Lactic acid bacteria MΓ‘laga (INIA) Food TecnologΓ­a de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓ­a de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from MΓ‘laga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria CΓ‘diz (INIA) Food TecnologΓ­a de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓ­a de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in CΓ‘diz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Tick metataxonomies Animal SabiO-Microbioomics Lab Host specificity and network structure of tick microbiota False True 0 46 SRA PRJNA1270924 https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI)
Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1002/mnfr.201600620
Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) Human Microbioma, AlimentaciΓ³n y Salud (BEA) Ulcerative Colitis patiens, Nursing homes residents Ulcerative colitis patients False True 0 20 NCBI PRJNA749914 / PRJNA749643 https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103
AQC_LagosBanyoles_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterial diversity and novelty in the deep sulfurous waters of three lakes of the Banyoles karstic area. 08/05/2010 08/05/2010 False True 0 18 ENA PRJEB5429 https://doi.org/10.1007/s00248-015-0696-2
AQC_LagosBanyoles_16S_NovelOTUs (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Novel OTUs (highest novelty plot area) derived from the samples of AQC_LagosBanyoles_16S (CEAB). 08/05/2010 08/05/2010 False True 0 Supplementary material (article) No own accession see article DOI https://doi.org/10.1007/s00248-015-0696-2
AQC_LagosHipersalinosChile_DGGE16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. False True 0 46 GenBank LK391422-LK391467 https://doi.org/10.1007/s00792-014-0694-1
GUT_Artemia_DGGE16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. False True 0 37 GenBank LK391468-LK391504 https://doi.org/10.1007/s00792-014-0694-1
GUT_GanadoAntiparasitarios_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Short-term changes in the microbiota and the greenhouse gas emissions of cattle dung treated with ivermectin (DoοΏ½ana). 17/07/2017 17/07/2017 False True 0 66 NCBI SRA PRJNA515520 https://doi.org/10.1016/j.apsoil.2025.106704
AIR_MontanaSierraNevada_16S (CEAB) Air Ecology of the Global Microbiome (CEAB) Bacterial composition of atmospheric deposition at high elevation in Sierra Nevada, compared with the free troposphere. 21/06/2006 07/10/2008 False True 0 54 NCBI SRA PRJNA509787 https://doi.org/10.1016/j.atmosenv.2019.01.038
GUT_Liebre_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of Iberian hares living in organic and conventional farmland. 21/10/2018 26/01/2019 False True 0 148 NCBI SRA PRJNA1168362 https://doi.org/10.1016/j.envpol.2025.125862
GUT_Jabali_16S (CEAB) Animal Ecology of the Global Microbiome (CEAB) Gut microbiota of wild boar in Spain and its relation to population management. 18/10/2019 01/02/2020 False True 0 88 NCBI SRA PRJNA886492 https://doi.org/10.1016/j.micres.2023.127444
Fungal Microbiome of Celtica gigantea Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 27 https://doi.org/10.1016/j.plantsci.2020.110762
SOIL_RizosferaPlantasRaras_16S (CEAB) Plants Ecology of the Global Microbiome (CEAB) Root-associated bacteria (and aboveground arthropod visitors) of rare plant species in large and small populations. False True 0 81 https://doi.org/10.1016/j.ppees.2026.125930
SOIL_MonegrosGallocanta_16S (CEAB) Soil Ecology of the Global Microbiome (CEAB) Composition, potential functions and novelty of the microbial communities of gypsum-rich and hypersaline soils of Monegros and Gallocanta. 07/10/2010 17/07/2014 False True 0 34 NCBI SRA PRJNA420947 https://doi.org/10.1016/j.scitotenv.2018.09.050
AQC_LagosAlpinos_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). 25/09/2013 25/09/2013 False True 0 2 ENA PRJEB6029 https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929