| Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB36469 |
Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147) |
| Malaspina surface picoplankton 16S rRNA gene (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB25224 |
Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026) |
| Malaspina surface picoplankton 18S rRNA gene (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23913 |
|
| Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJNA365144; PRJNA365146; PRJNA365147; PRJNA365145; PRJNA365148; PRJNA365142; PRJNA365143; PRJNA365133; PRJNA365141; PRJNA365132; PRJNA365134; PRJNA365135; PRJNA365136; PRJNA365140; PRJNA365137; PRJNA365138; PRJNA365139 |
|
| MARINHET_ICM |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
False |
False |
2001 |
|
|
|
|
|
|
| MARINHET_ICM_ATP09 |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
False |
False |
33 |
|
|
|
|
|
|
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| MARINHET_ICM_Malaspina |
|
Aquatic |
Ecology of Marine Microbes |
Malaspina Expedition, MARINHET |
|
|
|
|
False |
False |
343 |
|
|
|
|
|
|
| MARINHET_ICM_MIFASOL |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
False |
False |
245 |
|
|
|
|
|
|
| MARINHET_ICM_Tara |
|
Aquatic |
Ecology of Marine Microbes |
MARINHET |
|
|
|
|
True |
False |
1246 |
|
|
|
|
|
|
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB |
|
|
|
|
|
False |
False |
0 |
|
|
|
ZENODO |
|
https://doi.org/10.5281/zenodo.17159964 |
| Microbial metabolism and intestinal barrier |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals and patients |
|
|
|
False |
True |
0 |
|
1 |
|
NCBI |
PRJNA731070 |
https://doi.org/10.3390/microorganisms9071378 |
| Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Nursing homes residents |
Nursing home residents |
|
|
|
False |
False |
0 |
|
400 |
|
|
|
|
| Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
41 |
|
|
|
https://doi.org/10.1002/mnfr.201600620 |
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48517 |
|
| Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Healthy individuals (adults) and nutritional interventions |
Healthy individuals |
|
|
|
False |
False |
0 |
|
1 |
|
|
|
https://doi.org/10.1021/jf402816r |
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
|
Aquatic |
Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
2009 |
2015 |
False |
True |
0 |
|
|
|
ZENODO |
|
10.5281/zenodo.17183572 |
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
| Streptococcus (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Styela plicata microbiome - multidimensional variability (CEAB) |
92 ascidian samples (gill + gut + tunic × juvenile + adult × 3 harbours) + 12 seawater. Paper analyses 104 samples (some deposited samples excluded). Co-analysed with PRJNA1030313 (Galià-Camps et al. 2024). Functional: 9,107 KEGG orthologs, 377 pathways. |
Animal |
Molecular ecology of marine benthos |
|
Multidimensional variability of Styela plicata microbiome across body compartments (gill, gut, tunic), ontogenetic stages (juvenile/adult) and three harbour populations; correlation with trace element concentrations |
|
27/4/20 |
27/4/20 |
False |
True |
0 |
|
112 |
|
NCBI |
PRJNA982737 |
10.1016/j.isci.2023.107812 |
| Styela plicata microbiome - spatio-temporal dynamics (CEAB) |
5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià-Camps et al. 2023) but deposited separately. |
Animal |
Molecular ecology of marine benthos |
|
Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
|
15/1/20 |
28/10/21 |
False |
True |
0 |
|
188 |
|
NCBI |
PRJNA1030313 |
10.1016/j.marpolbul.2024.116477 |
| Tick metataxonomies |
|
Animal |
SabiO-Microbioomics Lab |
|
Host specificity and network structure of tick microbiota |
|
|
|
False |
True |
0 |
|
46 |
|
SRA |
PRJNA1270924 |
https://doi.org/10.1002/ece3.71714Digital Object Identifier (DOI) |
| Tick Metataxonomies (5 pooled samples) |
|
Animal |
SabiO-Microbioomics Lab |
|
Exploring tick microbiota of Hyalomma lusitanicum |
|
|
|
False |
True |
0 |
|
5 pooled samples |
|
SRA |
PRJNA681858 |
https://doi.org/10.1016/j.ttbdis.2020.101624 |
| Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Ulcerative Colitis patiens, Nursing homes residents |
Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
20 |
|
NCBI |
PRJNA749914 /
PRJNA749643 |
https://doi.org/10.1002/mnfr.202101073 https://doi.org/10.3390/cimb44040103 |
| Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group) |
|
Human |
Microbioma, Alimentación y Salud (BEA) |
Ulcerative Colitis patiens |
Oral and fecal microbiome from Ulcerative colitis patients |
|
|
|
False |
True |
0 |
|
21 |
|
NCBI |
PRJNA749643 |
https://doi.org/10.3390/cimb44040103 |
| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| Yeast from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Yeast from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
6 |
|
|
|
|
|
|
