| Styela plicata microbiome - spatio-temporal dynamics (CEAB) |
5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià-Camps et al. 2023) but deposited separately. |
Animal |
Molecular ecology of marine benthos |
|
Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
|
15/1/20 |
28/10/21 |
False |
True |
0 |
|
188 |
|
NCBI |
PRJNA1030313 |
10.1016/j.marpolbul.2024.116477 |
| Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. |
Animal |
Molecular ecology of marine benthos |
|
Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries |
|
1/1/15 |
31/12/16 |
False |
True |
0 |
|
4323 |
|
Other |
|
10.3389/fmars.2020.00201 |
| rrn operon ONT sequencing from human feces - CeD patients and relatives (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Kinship perspective study on subjects with celiac disease with first-degree non-celiac relatives |
|
01/04/2022 |
|
False |
True |
0 |
|
6 |
|
ENA |
PRJEB74092 |
|
| rrn operon ONT sequencing from human feces - COVID patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection |
|
01/10/2020 |
|
False |
True |
0 |
|
119 |
|
ENA |
PRJEB102567 |
|
| rrn operon ONT sequencing from human feces - FMT (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation |
|
10/04/2017 |
|
False |
True |
0 |
|
3 |
|
ENA |
PRJEB33947 |
10.1101/2020.09.11.292896 |
| V3-V4 16S amplicons from human feces - AXOS intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) |
|
04/08/2014 |
|
False |
True |
0 |
|
30 |
|
ENA |
PRJEB25727 |
10.1128/mSystems.00209-19 |
| V3-V4 16S amplicons from human feces - UCI patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-centre study to assess the intestinal microbiota of ICU patients upon admission and follow-up of those with a sepsis diagnosis |
|
05/06/2017 |
29/01/2018 |
False |
True |
0 |
|
250 |
|
ENA |
PRJEB33360 |
10.1080/19490976.2019.1707610 |
| V3-V4 16S amplicons from human feces - newborns with CeD (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota trajectory in early life may predict development of celiac disease |
|
|
|
False |
True |
0 |
|
39 |
|
ENA |
PRJEB23313 |
10.1186/s40168-018-0415-6 |
| V3-V4 16S amplicons from human feces - obese+IR children (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening |
|
01/03/2013 |
|
False |
True |
0 |
|
51 |
|
ENA |
PRJEB37005 |
10.1128/mSystems.00857-19 |
| V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis |
|
01/02/2021 |
01/06/2023 |
False |
True |
0 |
|
60 |
|
ENA |
PRJEB104642 |
|
| V3-V4 16S amplicons from rats - extracellular vesicles intervention (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Extracellular vesicles from mesenchymal stem cells impact on motor impairment and gut microbiota |
|
01/02/2022 |
|
False |
True |
0 |
|
56 |
|
ENA |
PRJEB71610 |
|
| V3-V4 16S amplicons from rats - probiotic safety assay (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 |
|
30/11/2017 |
|
False |
True |
0 |
|
42 |
|
ENA |
PRJEB35764 |
10.3390/nu12020551 |
| Shotgun sequencing from human feces - caloric restriction intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled |
|
|
|
False |
True |
0 |
|
160 |
|
ENA |
PRJEB36898 |
10.1002/mnfr.202000996 |
| V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice |
|
01/11/2019 |
|
False |
True |
0 |
|
50 |
|
ENA |
PRJEB37867 |
10.1080/19490976.2020.1865706 |
| V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Holdemanella biformis improves glucose tolerance via GLP-1 signalling in diet-induced obese mice |
|
01/06/2018 |
|
False |
True |
0 |
|
28 |
|
ENA |
PRJEB38356 |
10.1096/fj.202100126R |
| V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 |
|
11/11/2019 |
|
False |
True |
0 |
|
62 |
|
ENA |
PRJEB46294 |
|
| V3-V4 - 16S amplicons from mice/probiotic properties 4 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Microbiota analysis on obese mice following high-fat and high-sugar diet and oral administration of Phascolarctobacterium faecium DSM 32890 |
|
11/11/2019 |
|
False |
True |
0 |
|
29 |
|
ENA |
PRJEB66189 |
|
| Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
1 |
|
|
|
ENA |
PRJNA493151 |
|
| Clostridia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
2 |
|
|
|
|
|
|
| Blautia (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Yeast from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
3 |
|
|
|
|
|
|
| Yeast from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
6 |
|
|
|
|
|
|
| Lactic acid bacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Streptococcus (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
9 |
|
|
|
|
|
|
| Bacteria from Gamoneu cheese rind (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
11 |
|
|
|
|
|
|
| Bacteria from whey (rennet coagulated milk in the lab) (IPLA) |
|
Food |
MicroHealth |
|
|
|
2020 |
2024 |
False |
False |
13 |
|
|
|
|
|
|
| Bifidobacteria (IPLA) |
|
Human |
MicroHealth |
|
|
|
|
|
True |
False |
16 |
|
|
|
|
|
|
| Lactic acid bacteria Málaga (INIA) |
|
Food |
Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
|
Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga |
|
14/06/2011 |
18/10/2011 |
True |
False |
19 |
|
10 |
|
|
|
http://dx.doi.org/10.1016/j.idairyj.2015.09.010
https://doi.org/10.1016/j.ijfoodmicro.2019.03.011 |
| Fungal Microbiome of Celtica gigantea |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
27 |
|
|
|
|
|
https://doi.org/10.1016/j.plantsci.2020.110762 |
| Bacteria from artichoke (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
31 |
|
|
|
|
|
|
| MARINHET_ICM_ATP09 |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas |
MARINHET |
|
|
|
|
False |
False |
33 |
|
|
|
|
|
|
| Bacteria from beer bagasse (BSG) (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Isolates from the human gastrointestinal tract (IPLA) |
|
Human |
MicroHealth, MicroHealth, MicroHealth, MicroHealth |
|
|
|
|
|
False |
False |
34 |
|
|
|
|
|
|
| Bacteria from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
89 |
|
|
|
|
|
|
| Yeast from apple pomace (IPLA) |
|
Food |
MicroHealth |
|
|
|
|
|
False |
False |
92 |
|
|
|
|
|
|
| MED_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol |
|
|
|
|
|
False |
False |
125 |
|
|
|
|
|
|
| Fungal Microbiome of Festuca rubra subsp. pruinosa |
|
Plants |
Plant Microbiome Collection |
Fungal Microbiome of Plants |
Survey of fungal endophytes in wild plants |
|
|
|
True |
False |
130 |
|
|
|
|
|
https://doi.org/10.3389/fmicb.2018.03321 |
| MARINHET_ICM_BBMO |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas |
BBMO temporal series, MARINHET |
|
|
|
|
False |
False |
134 |
|
|
|
|
|
|
| Colección de Hongos Micorrícicos Arbusculares (EEZ) |
|
Terrestrial |
EEZ-Mycorrhizal Ecology Lab |
Arbuscular Mycorrhizal Fungi |
|
|
|
|
False |
False |
210 |
|
|
|
|
|
|
| MARINHET_ICM_MIFASOL |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas |
MARINHET |
|
|
|
|
False |
False |
245 |
|
|
|
|
|
|
| MARINHET_ICM_Malaspina |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas |
Malaspina Expedition, MARINHET |
|
|
|
|
False |
False |
343 |
|
|
|
|
|
|
| MARINHET_ICM_Tara |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas |
MARINHET |
|
|
|
|
True |
False |
1246 |
|
|
|
|
|
|
| REMEI (ICM) |
|
Aquatic |
Ecology of Marine Microbes-PI: P.Gasol |
|
|
|
|
|
False |
False |
1643 |
|
|
|
|
|
|
| MARINHET_ICM |
|
Aquatic |
Ecology of Marine Microbes-PI: S.Acinas |
MARINHET |
|
|
|
|
False |
False |
2001 |
|
|
|
|
|
|
