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Nombre Notas Biomas Grupos de investigaciΓ³n Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos Γ³micos NΒΊ Aislados NΒΊ Metagenomas NΒΊ Muestras AnΓ‘lisis genΓ³mico Repositorio Accession ID Publicaciones
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJNA736051
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) Aquatic Malaspina Expedition False True 0 ENA PRJEB48517
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
MARINHET_ICM Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET False False 2001
MARINHET_ICM_ATP09 Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET False False 33
MARINHET_ICM_BBMO Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) BBMO temporal series, MARINHET False False 134
MARINHET_ICM_MIFASOL Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET False False 245
MARINHET_ICM_Malaspina Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) Malaspina Expedition, MARINHET False False 343
MARINHET_ICM_Tara Aquatic Ecology of Marine Microbes-PI: S.Acinas (ICM) MARINHET True False 1246
MED_ICM Aquatic Ecology of Marine Microbes-PI: P.Gasol (ICM) False False 125
BBMO surface nanoplankton metagenomes (ICM) Aquatic EMM - LOGLAB (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False False 0 ENA PRJEB51979
Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) Aquatic EMM - LOGLAB (ICM) False False 0 ZENODO https://doi.org/10.5281/zenodo.17159964
REMEI (ICM) Aquatic Ecology of Marine Microbes-PI: P.Gasol (ICM) False False 1643
Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) Aquatic EMM - LOGLAB (ICM), Ecology of Marine Microbes-PI: P.Gasol (ICM) BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2015 False True 0 ZENODO 10.5281/zenodo.17183572
AQC_EfluentesDepuradoras_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial communities (16S rRNA gene) along experimental river channels at different times, seeded with wastewater treatment plant effluent (Urban River Lab). 27/03/2017 12/09/2018 False False 0 302
AQC_LagosAlpinosNeuston_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacteria and archaea of the surface microlayer (neuston) and the underlying plankton in three Pyrenean lakes under two atmospheric aerosol conditions. 18/09/2007 12/11/2007 False True 0 12 CAMERA CAM_P_0000910 https://doi.org/10.1111/1574-6941.12068
AQC_LagosAlpinos_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterioplankton assembly across more than 300 Pyrenean lakes and the environmental sources of their bacteria. 01/07/2011 20/09/2011 False True 0 304 NCBI SRA PRJNA413654 https://doi.org/10.1111/1462-2920.14848
AQC_LagosAlpinos_18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Diversity of planktonic eukaryotes (autotrophs, heterotrophs and parasites) across Pyrenean mountain lakes. 01/07/2011 20/09/2011 False True 0 227 NCBI SRA PRJNA413654 https://doi.org/10.1038/s41598-018-22835-3
AQC_LagosAlpinos_Cloning16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Vertical distribution and phylogeny of ammonia-oxidizing archaea in the water column of the deep Lake Redon (Pyrenees). 20/09/2007 17/04/2008 False True 0 162 GenBank HE589603-HE589764 https://doi.org/10.1038/ismej.2012.33
AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). 20/09/2007 17/04/2008 False True 0 GenBank HE598566-HE598696 https://doi.org/10.1038/ismej.2012.33
AQC_LagosAlpinos_Cloning18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Genetic diversity of planktonic eukaryotes in 11 high-mountain lakes of the Central Pyrenees. 01/07/2008 31/07/2008 False True 0 343 GenBank HE655089-HE655431 https://doi.org/10.1111/j.1462-2920.2012.02797.x
AQC_LagosAlpinos_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomy and functional potential (C, N, S and P cycling) of the microbial community in the upper and bottom waters of Lake Redon (Pyrenees). 25/09/2013 25/09/2013 False True 0 2 ENA PRJEB6029 https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosAlpinos_Metagenoma_FunctionalGenes (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Abundance of C, N, S and P cycling marker genes (KEGG), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). 25/09/2013 25/09/2013 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1016/j.scitotenv.2019.135929
AQC_LagosBanyoles_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterial diversity and novelty in the deep sulfurous waters of three lakes of the Banyoles karstic area. 08/05/2010 08/05/2010 False True 0 18 ENA PRJEB5429 https://doi.org/10.1007/s00248-015-0696-2
AQC_LagosBanyoles_16S_NovelOTUs (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Novel OTUs (highest novelty plot area) derived from the samples of AQC_LagosBanyoles_16S (CEAB). 08/05/2010 08/05/2010 False True 0 Supplementary material (article) No own accession see article DOI https://doi.org/10.1007/s00248-015-0696-2
AQC_LagosBanyoles_18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Protist diversity in the sulfidic waters of the Banyoles karstic lakes, from 454 pyrotag sequencing of six samples. 10/05/2010 10/05/2010 False True 0 455 GenBank LN735563-LN736017 https://doi.org/10.1111/1758-2229.12324
AQC_LagosBanyoles_DGGE18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Protist diversity in sulfurous karstic lakes and coastal lagoons, from DGGE fingerprinting of 40 water samples. 12/07/1989 10/07/2002 False True 0 108 GenBank AJ862378-AJ862487 https://doi.org/10.1111/1758-2229.12324
AQC_LagosBanyoles_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomic diversity and functional potential of the microbial community of the sulfurous lakes CisοΏ½ and Banyoles (basin C-III). 08/05/2010 09/05/2010 False True 0 12 CAMERA CAM_P_0001174 https://doi.org/10.1038/ismej.2014.254
AQC_LagosBanyoles_Metagenoma_TaxFuncTables (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Taxonomic composition and functional processes derived from the metagenomes of AQC_LagosBanyoles_Metagenoma (CEAB). 08/05/2010 09/05/2010 False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1038/ismej.2014.254
AQC_LagosHipersalinosChile_DGGE16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. False True 0 46 GenBank LK391422-LK391467 https://doi.org/10.1007/s00792-014-0694-1
AQC_LagosMonegros_16S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Microbial community assembly along a wide salinity gradient (0.1-40%) in shallow saline ponds of the Monegros Desert. 12/11/2012 30/04/2014 False True 0 274 NCBI SRA PRJNA429605 https://doi.org/10.1038/s41396-019-0454-4
AQC_LagosMonegros_DGGE16S18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Bacterial, archaeal and eukaryal diversity and novelty in saline shallow lakes of the Monegros Desert, in winter and spring. 21/12/2004 25/05/2005 False True 0 80 GenBank AM071495-AM071509, AM072914, AM072916-AM072918, AM072920-AM072921, AM072923, AM072928, AM072930, AM072932-AM072939, AM085949-AM085957, AM085959-AM085962, AM085964, AM085966-AM085969, AM085971, AM085973-AM085974, AM085976-AM085993, AM087460-AM087468 https://doi.org/10.1111/1574-6941.12139
AQC_LagosMonegros_DGGE18S (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Diversity and novelty of planktonic protists in 34 coastal and inland saline ponds of Spain and Chile. 01/05/1992 30/06/2005 False True 0 114 GenBank AM072914-AM072938, AM084278-AM084326, AM087460-AM087468, AM179805-AM179824, AM231690-AM231700 https://doi.org/10.1111/1574-6941.12095
AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). False True 0 Supplementary material (article) No own accession - see article DOI https://doi.org/10.1111/1574-6941.12095
AQC_LagosMonegros_Metagenoma (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Shotgun metagenomes of the microbial communities of three Monegros hypersaline lakes sampled over two years. 13/11/2012 23/12/2014 False False 0 41
AQC_RiosMontseny_16S_2022 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Effect of organic carbon availability on ammonium uptake and on the microbial community of an intermittent Mediterranean stream (Fuirosos). 28/03/2019 20/02/2020 False True 0 86 NCBI SRA PRJNA881938 https://doi.org/10.1111/fwb.14152
AQC_RiosMontseny_16S_2024 (CEAB) Aquatic Ecology of the Global Microbiome (CEAB) Influence of organic matter composition and nutrient ratios on nitrate uptake by microbes in nine Mediterranean streams and wetlands. 19/04/2021 12/05/2021 False True 0 NCBI SRA PRJNA1131982 https://doi.org/10.1029/2024JG008346
Food metagenomes (IPLA) Food MicroHealth False True 0 SRA
Bacteria from whey (rennet coagulated milk in the lab) (IPLA) Food MicroHealth 2020 2024 False False 13
Bacteria from Gamoneu cheese rind (IPLA) Food MicroHealth 2020 2024 False False 11
Bacteria from beer bagasse (BSG) (IPLA) Food MicroHealth False False 34
Bacteria from artichoke (IPLA) Food MicroHealth False False 31
Yeast from beer bagasse (BSG) (IPLA) Food MicroHealth False False 6
Yeast from artichoke (IPLA) Food MicroHealth False False 3
Bacteria from apple pomace (IPLA) Food MicroHealth False False 89
Yeast from apple pomace (IPLA) Food MicroHealth False False 92
Lactic acid bacteria MΓ‘laga (INIA) Food TecnologΓ­a de Productos LΓ‘cteos y CΓ‘rnicos (Dpto. TecnologΓ­a de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from MΓ‘laga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011