| AQC_LagosBanyoles_DGGE18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Protist diversity in sulfurous karstic lakes and coastal lagoons, from DGGE fingerprinting of 40 water samples. |
|
12/07/1989 |
10/07/2002 |
False |
True |
0 |
|
108 |
|
GenBank |
AJ862378-AJ862487 |
https://doi.org/10.1111/1758-2229.12324 |
| AQC_LagosMonegros_DGGE16S18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial, archaeal and eukaryal diversity and novelty in saline shallow lakes of the Monegros Desert, in winter and spring. |
|
21/12/2004 |
25/05/2005 |
False |
True |
0 |
|
80 |
|
GenBank |
AM071495-AM071509, AM072914, AM072916-AM072918, AM072920-AM072921, AM072923, AM072928, AM072930, AM072932-AM072939, AM085949-AM085957, AM085959-AM085962, AM085964, AM085966-AM085969, AM085971, AM085973-AM085974, AM085976-AM085993, AM087460-AM087468 |
https://doi.org/10.1111/1574-6941.12139 |
| AQC_LagosMonegros_DGGE18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Diversity and novelty of planktonic protists in 34 coastal and inland saline ponds of Spain and Chile. |
|
01/05/1992 |
30/06/2005 |
False |
True |
0 |
|
114 |
|
GenBank |
AM072914-AM072938, AM084278-AM084326, AM087460-AM087468, AM179805-AM179824, AM231690-AM231700 |
https://doi.org/10.1111/1574-6941.12095 |
| AQC_LagosAlpinosNeuston_16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Bacteria and archaea of the surface microlayer (neuston) and the underlying plankton in three Pyrenean lakes under two atmospheric aerosol conditions. |
|
18/09/2007 |
12/11/2007 |
False |
True |
0 |
|
12 |
|
CAMERA |
CAM_P_0000910 |
https://doi.org/10.1111/1574-6941.12068 |
| AQC_LagosBanyoles_Metagenoma (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomic diversity and functional potential of the microbial community of the sulfurous lakes CisοΏ½ and Banyoles (basin C-III). |
|
08/05/2010 |
09/05/2010 |
False |
True |
0 |
|
12 |
|
CAMERA |
CAM_P_0001174 |
https://doi.org/10.1038/ismej.2014.254 |
| AQC_LagosAlpinos_Cloning16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Vertical distribution and phylogeny of ammonia-oxidizing archaea in the water column of the deep Lake Redon (Pyrenees). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
162 |
|
GenBank |
HE589603-HE589764 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Cloning16S_AmoAOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
amoA gene OTUs derived from the clone libraries of the samples of AQC_LagosAlpinos_Cloning16S (CEAB). |
|
20/09/2007 |
17/04/2008 |
False |
True |
0 |
|
|
|
GenBank |
HE598566-HE598696 |
https://doi.org/10.1038/ismej.2012.33 |
| AQC_LagosAlpinos_Cloning18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Genetic diversity of planktonic eukaryotes in 11 high-mountain lakes of the Central Pyrenees. |
|
01/07/2008 |
31/07/2008 |
False |
True |
0 |
|
343 |
|
GenBank |
HE655089-HE655431 |
https://doi.org/10.1111/j.1462-2920.2012.02797.x |
| AQC_LagosHipersalinosChile_DGGE16S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Free-living bacterial diversity in natural brines and laboratory Artemia cultures of Chilean hypersaline environments. |
|
|
|
False |
True |
0 |
|
46 |
|
GenBank |
LK391422-LK391467 |
https://doi.org/10.1007/s00792-014-0694-1 |
| GUT_Artemia_DGGE16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut bacteria of wild and laboratory Artemia from Chilean hypersaline sites, compared with the bacteria of the surrounding brine. |
|
|
|
False |
True |
0 |
|
37 |
|
GenBank |
LK391468-LK391504 |
https://doi.org/10.1007/s00792-014-0694-1 |
| GUT_AnelidosArticos_16S (CEAB) |
|
Animal |
Ecology of the Global Microbiome (CEAB) |
|
Gut symbionts of the Arctic peat-soil worm Enchytraeus crypticus and their role in supplying essential amino acids. |
|
|
|
False |
True |
0 |
|
128 |
|
GenBank |
LM999772-LM999899 |
https://doi.org/10.1111/1365-2656.12563 |
| AQC_LagosBanyoles_18S (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Protist diversity in the sulfidic waters of the Banyoles karstic lakes, from 454 pyrotag sequencing of six samples. |
|
10/05/2010 |
10/05/2010 |
False |
True |
0 |
|
455 |
|
GenBank |
LN735563-LN736017 |
https://doi.org/10.1111/1758-2229.12324 |
| AIR_MetroBarcelona_16S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial composition and abundance of airborne particles inside trains, on platforms and in lobbies of the Barcelona subway over four months. |
|
18/11/2013 |
11/02/2014 |
False |
True |
0 |
|
136 |
|
GenBank |
LT158063-LT158198 |
https://doi.org/10.1111/ina.12343 |
| AQC_LagosBanyoles_16S_NovelOTUs (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Novel OTUs (highest novelty plot area) derived from the samples of AQC_LagosBanyoles_16S (CEAB). |
|
08/05/2010 |
08/05/2010 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession see article DOI |
https://doi.org/10.1007/s00248-015-0696-2 |
| AIR_MontanaMontseny_BacterialAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Bacterial air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AIR_MontanaMontseny_EukaryalAirCore (CEAB) |
|
Soil, Air |
Ecology of the Global Microbiome (CEAB) |
|
Eukaryal air-core zOTUs derived from the samples of AIR_MontanaMontseny_16S18S (CEAB). |
|
05/12/1987 |
27/03/2015 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1462-2920.70046 |
| AQC_LagosAlpinos_Metagenoma_16SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the prokaryotes (16S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_18SOrderTable (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Order-level taxonomic composition of the eukaryotes (18S rRNA gene reads), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosAlpinos_Metagenoma_FunctionalGenes (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Abundance of C, N, S and P cycling marker genes (KEGG), derived from the metagenomes of AQC_LagosAlpinos_Metagenoma (CEAB). |
|
25/09/2013 |
25/09/2013 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1016/j.scitotenv.2019.135929 |
| AQC_LagosBanyoles_Metagenoma_TaxFuncTables (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Taxonomic composition and functional processes derived from the metagenomes of AQC_LagosBanyoles_Metagenoma (CEAB). |
|
08/05/2010 |
09/05/2010 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1038/ismej.2014.254 |
| AQC_LagosMonegros_DGGE18S_ClosestMatches (CEAB) |
|
Aquatic |
Ecology of the Global Microbiome (CEAB) |
|
Closest environmental and cultured matches (BLAST) derived from the 18S rRNA gene sequences of AQC_LagosMonegros_DGGE18S (CEAB). |
|
|
|
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1111/1574-6941.12095 |
| SOIL_RizosferaOlivos_16S_ArchaeaAbundance (CEAB) |
|
Soil |
Ecology of the Global Microbiome (CEAB) |
|
Relative abundance of archaeal groups (16S rRNA gene cloning vs pyrotag) derived from the samples of SOIL_RizosferaOlivos_16S (CEAB). |
|
01/01/2009 |
31/12/2009 |
False |
True |
0 |
|
|
|
Supplementary material (article) |
No own accession - see article DOI |
https://doi.org/10.1371/journal.pone.0125787 |
| rrn operon ONT sequencing from human feces - COVID patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbial signatures in hospitalised patients under SARS-CoV-2 infection |
|
01/10/2020 |
|
False |
True |
0 |
|
119 |
|
ENA |
PRJEB102567 |
|
| V3-V4 16S amplicons from human feces - Wilson Disease (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metabolic dysfunction and drug-host-microbe interactions in the Wilson's Disease gut-liver axis |
|
01/02/2021 |
01/06/2023 |
False |
True |
0 |
|
60 |
|
ENA |
PRJEB104642 |
|
| AIR_MontanaPirineos_16S18S (CEAB) |
|
Air |
Ecology of the Global Microbiome (CEAB) |
|
Seasonal patterns of airborne bacteria and eukaryotes in a long time series (2007-2013) in the Pyrenees, and their link to atmospheric circulation. |
|
15/05/2007 |
15/10/2013 |
False |
True |
0 |
|
274 |
|
ENA |
PRJEB14358 |
https://doi.org/10.1073/pnas.1812826115 |
| V3-V4 16S amplicons from human feces - newborns with CeD (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota trajectory in early life may predict development of celiac disease |
|
|
|
False |
True |
0 |
|
39 |
|
ENA |
PRJEB23313 |
10.1186/s40168-018-0415-6 |
| Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23771 |
Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9) |
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
26/01/2004 |
07/06/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB23788 |
Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) |
| Malaspina surface picoplankton 18S rRNA gene (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB23913 |
|
| Malaspina surface picoplankton 16S rRNA gene (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB25224 |
Ruiz-GonzΓ‘lez C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026) |
| V3-V4 16S amplicons from human feces - AXOS intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Metagenomic assessment of AXOS intake in overweight individuals (follow-up shotgun metagenomics on responders from an earlier 16S-based AXOS study) |
|
04/08/2014 |
|
False |
True |
0 |
|
30 |
|
ENA |
PRJEB25727 |
10.1128/mSystems.00209-19 |
| Malaspina 16S rDNA size-fractions (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB27154 |
|
| V3-V4 16S amplicons from human feces - UCI patients (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-centre study to assess the intestinal microbiota of ICU patients upon admission and follow-up of those with a sepsis diagnosis |
|
05/06/2017 |
29/01/2018 |
False |
True |
0 |
|
250 |
|
ENA |
PRJEB33360 |
10.1080/19490976.2019.1707610 |
| rrn operon ONT sequencing from human feces - FMT (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Strand-wise and bait-assisted assembly of nearly-full rrn operons and its application to assess species engraftment after faecal microbiota transplantation |
|
10/04/2017 |
|
False |
True |
0 |
|
3 |
|
ENA |
PRJEB33947 |
10.1101/2020.09.11.292896 |
| V3-V4 16S amplicons from rats - probiotic safety assay (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Faecal microbiota assessment on rats under sub-chronical oral administration of Bacteroides uniformis CECT 7771 |
|
30/11/2017 |
|
False |
True |
0 |
|
42 |
|
ENA |
PRJEB35764 |
10.3390/nu12020551 |
| Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB36469 |
Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147) |
| Shotgun sequencing from human feces - caloric restriction intervention (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Multi-omics analysis on overweight subjects under a caloric restriction intervention with fibre supplementation and placebo-controlled |
|
|
|
False |
True |
0 |
|
160 |
|
ENA |
PRJEB36898 |
10.1002/mnfr.202000996 |
| V3-V4 16S amplicons from human feces - obese+IR children (IATA) |
|
Human |
Microbial Ecology, Nutrition and Health |
|
Gut microbiota of obese children relates to intestinal inflammation and metabolic phenotype worsening |
|
01/03/2013 |
|
False |
True |
0 |
|
51 |
|
ENA |
PRJEB37005 |
10.1128/mSystems.00857-19 |
| V3-V4 - 16S amplicons from mice/probiotic properties 1 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Synbiotic treatment of mice against diet-induced obesity: Bacteroides uniformis CECT 7771 combined with wheat-bran extract (WBE)-based fibre used as an innovative synbiotic product reducing diet-induced obesity in mice |
|
01/11/2019 |
|
False |
True |
0 |
|
50 |
|
ENA |
PRJEB37867 |
10.1080/19490976.2020.1865706 |
| V3-V4 - 16S amplicons from mice/probiotic properties 2 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Holdemanella biformis improves glucose tolerance via GLP-1 signalling in diet-induced obese mice |
|
01/06/2018 |
|
False |
True |
0 |
|
28 |
|
ENA |
PRJEB38356 |
10.1096/fj.202100126R |
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
28/01/2003 |
02/08/2016 |
False |
True |
0 |
|
|
|
ENA |
PRJEB38773 |
|
| Malaspina Expedition 2010 bathypelagic metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB44456 |
|
| Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45011 |
|
| Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45014 |
|
| Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB45015 |
|
| V3-V4 - 16S amplicons from mice/probiotic properties 3 (IATA) |
|
Animal |
Microbial Ecology, Nutrition and Health |
|
Interactions between immunity, diet, and Bacteroides uniformis CECT 7771 |
|
11/11/2019 |
|
False |
True |
0 |
|
62 |
|
ENA |
PRJEB46294 |
|
| Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB46335 |
|
| BBMO temporal series (BBMO_ICM) |
|
Aquatic |
EMM - LOGLAB (ICM) |
BBMO temporal series |
Temporal series of the marine observatory of Blanes Bay |
|
20/03/2001 |
|
False |
False |
0 |
|
|
|
ENA |
PRJEB48035 |
|
| EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 |
Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035) |
| Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva) |
|
Aquatic |
|
Malaspina Expedition |
|
|
|
|
False |
True |
0 |
|
|
|
ENA |
PRJEB48517 |
|
