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Nombre Notas Biomas Grupos de investigación Proyectos Objeto de estudio Origen del microbioma Fecha inicial Fecha final Cultivo Datos ómicos Nº Aislados Nº Metagenomas Nº Muestras Análisis genómico Repositorio Accession ID Publicaciones
False False 0
Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group) Human Microbioma, Alimentación y Salud (BEA) Early Alzheimer patients Alzheimer patients False False 0
Bacteria from apple pomace (IPLA) Food MicroHealth False False 89
Bacteria from artichoke (IPLA) Food MicroHealth False False 31
Bacteria from beer bagasse (BSG) (IPLA) Food MicroHealth False False 34
Bacteria from Gamoneu cheese rind (IPLA) Food MicroHealth 2020 2024 False False 11
Bacteria from whey (rennet coagulated milk in the lab) (IPLA) Food MicroHealth 2020 2024 False False 13
BBMO 16S rRNA gene pico- & nano-plankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 28/01/2003 02/08/2016 False True 0 ENA PRJEB38773
BBMO 18S rRNA gene pico- & nano-plankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 26/01/2004 07/06/2016 False True 0 ENA PRJEB23788 Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929)
BBMO MetaGenome nanoplankton (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO RNA_extraction (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO SAGs (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False True 0
BBMO surface nanoplankton metagenomes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False False 0 ENA PRJEB51979
BBMO surface picoplankton metagenomes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 2009 2023 False True 0 ENA PRJEB51979
BBMO temporal series (BBMO_ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay 20/03/2001 False False 0 ENA PRJEB48035
BBMO Viromes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB BBMO temporal series Temporal series of the marine observatory of Blanes Bay False False 0
Bifidobacteria (IPLA) Human MicroHealth True False 16
Blautia (IPLA) Human MicroHealth False False 3
Clostridia (IPLA) Human MicroHealth False False 2
Colección de Hongos Micorrícicos Arbusculares (EEZ) Terrestrial EEZ-Mycorrhizal Ecology Lab Arbuscular Mycorrhizal Fungi False False 210
Didemnum vexillum microbiome - global survey (CEAB) 70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. Animal Molecular ecology of marine benthos Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups 1/1/15 31/12/16 False True 0 120 NCBI PRJNA608680 10.3389/fmars.2020.00201
Didemnum vexillum microbiome - global survey ZOTUs (CEAB) Derived product from collection "Didemnum vexillum microbiome - global survey (CEAB)" (PRJNA608680). 4,323 ZOTUs x 73 samples. Table S1 available as supplementary material of the article. No individual OMICS rows — this collection documents the ZOTU table as a whole. Animal Molecular ecology of marine benthos Bioinformatic product (ZOTU table) from global survey of D. vexillum microbiome; 4,323 ZOTUs detected across 73 samples from 13 localities in 7 countries 1/1/15 31/12/16 False True 0 4323 Other 10.3389/fmars.2020.00201
EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG) Aquatic Malaspina Expedition False True 0 ENA PRJEB48491; PRJEB48497; PRJEB48493; PRJEB48546; PRJEB48495; PRJEB48547; PRJEB48494; PRJEB48489; PRJEB48499; PRJEB48502; PRJEB48492; PRJEB48490; PRJEB48496; PRJEB48498; PRJEB48500; PRJEB48501; PRJEB48503; PRJEB73722; PRJEB48488 Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578 (10.1093/nar/gkz1035)
Food metagenomes (IPLA) Food MicroHealth False True 0 SRA
Fungal Microbiome of Celtica gigantea Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 27 https://doi.org/10.1016/j.plantsci.2020.110762
Fungal Microbiome of Festuca rubra subsp. pruinosa Plants Plant Microbiome Collection Fungal Microbiome of Plants Survey of fungal endophytes in wild plants True False 130 https://doi.org/10.3389/fmicb.2018.03321
Healthy children metataxonomies (IPLA) Human MicroHealth False True 0 SRA
Human adult metagenomes (IPLA) Human MicroHealth False True 0 SRA
Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Healthy individuals (adults) and nutritional interventions Healthy individuals False False 0 41 https://doi.org/10.1021/jf4025135
Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) SARS-CoV-2 patients SARS-CoV-2 patients False True 0 28 SRA PRJNA1099539 https://pubmed.ncbi.nlm.nih.gov/39744158/
Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group) Human Microbioma, Alimentación y Salud (BEA) Metabolic syndrome-Cardiovascular disease patients Individuals at cardiovascular risk and healthy subjects False True 0 32 NCBI PRJNA717111 https://doi.org/10.1039/D1FO03942C
Isolates from the human gastrointestinal tract (IPLA) Human MicroHealth, MicroHealth, MicroHealth, MicroHealth False False 34
Lactic acid bacteria (IPLA) Human MicroHealth True False 9
Lactic acid bacteria Cádiz (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria isolated from raw milk cheeses in Cádiz 14/06/2012 13/11/2012 True False 0 12 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Lactic acid bacteria Málaga (INIA) Food Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) Lactic acid bacteria biodiversity in raw goat milk cheeses from Málaga 14/06/2011 18/10/2011 True False 19 10 http://dx.doi.org/10.1016/j.idairyj.2015.09.010 https://doi.org/10.1016/j.ijfoodmicro.2019.03.011
Malaspina 16S rDNA size-fractions (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB27154
Malaspina air metagenome raw sequence reads (KAUST) Air Malaspina Expedition False True 0 ENA PRJNA319484
Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45011
Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45014
Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJNA736051
Malaspina diversity of deep microbial eukaryotes (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB9943
Malaspina Expedition 2010 bathypelagic metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB44456
Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB76155
Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI) Aquatic Malaspina Expedition False True 0 ENA PRJEB46335
Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB52452 Sánchez P et al., "Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition.", Sci Data, 2024 Feb 1;11(1):154 (10.1038/s41597-024-02974-1)
Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJNA330770
Malaspina Ketobacter Isolate (Shanghai Jiao Tong University) Aquatic Malaspina Expedition False True 1 ENA PRJNA493151
Malaspina Mesozooplankon (AZTI) Aquatic Malaspina Expedition False True 0 ENA PRJNA1033987
Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM) Aquatic Malaspina Expedition False True 0 ENA PRJEB45015
Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) Aquatic Ecology of Marine Microbes - LOGLAB Malaspina Expedition False True 0 ENA PRJEB23771 Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9)