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"Ecology of Marine Microbes - LOGLAB"
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| Nombre | Notas | Biomas | Grupos de investigación | Proyectos | Objeto de estudio | Origen del microbioma | Fecha inicial | Fecha final | Cultivo | Datos ómicos | Nº Aislados | Nº Metagenomas | Nº Muestras | Análisis genómico | Repositorio | Accession ID | Publicaciones |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BBMO temporal series (BBMO_ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | 20/03/2001 | False | False | 0 | ENA | PRJEB48035 | |||||||
| BBMO surface picoplankton metagenomes (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | 2009 | 2023 | False | True | 0 | ENA | PRJEB51979 | ||||||
| BBMO 16S rRNA gene pico- & nano-plankton (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | 28/01/2003 | 02/08/2016 | False | True | 0 | ENA | PRJEB38773 | ||||||
| BBMO 18S rRNA gene pico- & nano-plankton (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | 26/01/2004 | 07/06/2016 | False | True | 0 | ENA | PRJEB23788 | Giner CR et al., "Quantifying long-term recurrence in planktonic microbial eukaryotes.", Mol Ecol, 2019 Mar;28(5):923-935 (10.1111/mec.14929) | |||||
| BBMO MetaGenome nanoplankton (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | False | True | 0 | ||||||||||
| BBMO RNA_extraction (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | False | True | 0 | ||||||||||
| BBMO Viromes (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | False | False | 0 | ||||||||||
| BBMO SAGs (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | False | True | 0 | ||||||||||
| Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJNA330770 | |||||||||
| Malaspina diversity of deep microbial eukaryotes (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJEB9943 | |||||||||
| Malaspina 16S rDNA size-fractions (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJEB27154 | |||||||||
| Malaspina surface picoplankton 18S rRNA gene (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJEB23913 | |||||||||
| Malaspina surface picoplankton 16S rRNA gene (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJEB25224 | Ruiz-González C et al., "Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.", Mol Ecol, 2019 Apr;28(8):1930-1945 (10.1111/mec.15026) | ||||||||
| Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJEB36469 | Obiol A et al., "A metagenomic assessment of microbial eukaryotic diversity in the global ocean.", Mol Ecol Resour, 2020 May;20(3) (10.1111/1755-0998.13147) | ||||||||
| Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | Malaspina Expedition | False | True | 0 | ENA | PRJEB23771 | Giner CR et al., "Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean.", ISME J, 2020 Feb;14(2):437-449 (10.1038/s41396-019-0506-9) | ||||||||
| BBMO surface nanoplankton metagenomes (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | 2009 | 2023 | False | False | 0 | ENA | PRJEB51979 | ||||||
| Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM) | Aquatic | Ecology of Marine Microbes - LOGLAB | False | False | 0 | ZENODO | https://doi.org/10.5281/zenodo.17159964 | ||||||||||
| Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) | Aquatic | Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes | BBMO temporal series | Temporal series of the marine observatory of Blanes Bay | 2009 | 2015 | False | True | 0 | ZENODO | 10.5281/zenodo.17183572 |