| Air |
Microbiomes from air biomes |
Malaspina air metagenome raw sequence reads (KAUST) |
|
|
| Aquatic |
Microbiomes from freshwater and marine environments, including rivers, lakes, wetlands, and oceans |
BBMO temporal series (BBMO_ICM), BBMO surface picoplankton metagenomes (ICM), BBMO 16S rRNA gene pico- & nano-plankton (ICM), BBMO 18S rRNA gene pico- & nano-plankton (ICM), BBMO MetaGenome nanoplankton (ICM), BBMO RNA_extraction (ICM), BBMO Viromes (ICM), BBMO SAGs (ICM), Malaspina global 2010 deep ocean expedition - rRNA pyrotags (ICM), Malaspina diversity of deep microbial eukaryotes (ICM), Malaspina 16S rDNA size-fractions (ICM), Malaspina surface picoplankton 18S rRNA gene (ICM), Malaspina surface picoplankton 16S rRNA gene (ICM), Malaspina picoplankton 18S rRNA-gene sequences (V9 region) from ocean vertical profiles (ICM), Malaspina picoplankton 18S rRNA-gene sequences (V4 region) from ocean vertical profiles (ICM), Malaspina Expedition 2010 bathypelagic metagenomes (JGI), Malaspina Expedition 2010 bathypelagic metatranscriptomes (JGI), EMG produced TPA metagenomics assembly-Malaspina Expedition 2010 Microbial Vertical Profiles Metagenomes (EMG), Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed metagenome (JGI), Malaspina Expedition 2010 Microbial Picoplankton Vertical Profiles Metagenomes (ICM), Malaspina Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (ICM), Malaspina Amplicon 18S rRNA Illumina TAGs from Bathypelagic samples (ICM), Malaspina Amplicon 16S rRNA Illumina TAGs from Bathypelagic samples (ICM), Malaspina Expedition 2010 bathypelagic viral metagenomes (JGI), Malaspina Amplicon sequences of aerobic anoxygenic photoheterotrophic marine bacteria (ICM), Malaspina Mesozooplankon (AZTI), Patterns of eukaryotic diversity from the surface to the deep-ocean sediment (Univeristy of Genenva), Malaspina Ketobacter Isolate (Shanghai Jiao Tong University), MARINHET_ICM, MARINHET_ICM_ATP09, MARINHET_ICM_BBMO, MARINHET_ICM_MIFASOL, MARINHET_ICM_Malaspina, MARINHET_ICM_Tara, MED_ICM, BBMO surface nanoplankton metagenomes (ICM), Metagenomes_assembled_genomes_MAGs_nondereplicated (ICM), REMEI (ICM), Prokaryotic Gene Catalogs v1 (years 2009–2015) from the Blanes and Banyuls Bay Microbial Observatories (BBMO–SOLA) |
BBMO temporal series, Malaspina Expedition, MARINHET, Understanding top-down control in coastal bloom-forming protist: opening the parasitic compartiment - COPAS, Metabarcoding of benthic coastal sediment from the German Wadden Sea, Resource partitioning by Specialization in marine parasites. SMART, Distribution of chytrids infecting diatoms |
Ecology of Marine Microbes - LOGLAB, Ecology of Marine Microbes, Ecology of Marine Microbes, Littoral Biological Processes - PBL, Molecular ecology of marine benthos |
| Terrestrial |
Microbial communities inhabiting soil and land ecosystems |
Colección de Hongos Micorrícicos Arbusculares (EEZ) |
Arbuscular Mycorrhizal Fungi |
EEZ-Mycorrhizal Ecology Lab |
| Human |
Microorganisms that live in the human body, on the skin, in the gut, mouth, and in other locations within the body |
Lactic acid bacteria (IPLA), Bifidobacteria (IPLA), Streptococcus (IPLA), Healthy children metataxonomies (IPLA), Human adult metagenomes (IPLA), Ulcerative Colitis patients-Oral and Intestinal microbiome (CIAL-CSIC, BEA group), Oral microbiome and polyphenols intervention (CIAL-CSIC, BEA group), Polyphenols supplementation effects on human gut microbiome (CIAL-CSIC, BEA group), Inter-individual variability in intestinal polyphenols metabolism (CIAL-CSIC, BEA group), Microbiome-aging, nursing homes, metagenomics, resistome (CIAL-CSIC, BEA group), Intestinal microbiota role in cardiometabolic disorders (CIAL-CSIC, BEA group), Ulcerative Colitis patients - Polyphenols and oral and Intestinal microbiome (CIAL-CSIC, BEA group), Intestinal microbiome SARS-CoV-2 patients, included recurrent PCR+ (CIAL-CSIC, BEA group), Microbial metabolism and intestinal barrier, Alzheimer patients - Microbiome (CIAL-CSIC, BEA Group), Blautia (IPLA), Clostridia (IPLA), Isolates from the human gastrointestinal tract (IPLA) |
Ulcerative Colitis patiens, Healthy individuals (adults) and nutritional interventions, Metabolic syndrome-Cardiovascular disease patients, SARS-CoV-2 patients, Nursing homes residents, Early Alzheimer patients, Probiotabank |
Microbioma, Alimentación y Salud (BEA), MicroHealth, MicroHealth, MicroHealth, MicroHealth |
| Food |
Microorganisms involved in food production, fermentation, spoilage, or preservation |
Food metagenomes (IPLA), Bacteria from whey (rennet coagulated milk in the lab) (IPLA), Bacteria from Gamoneu cheese rind (IPLA), Bacteria from beer bagasse (BSG) (IPLA), Bacteria from artichoke (IPLA), Yeast from beer bagasse (BSG) (IPLA), Yeast from artichoke (IPLA), Bacteria from apple pomace (IPLA), Yeast from apple pomace (IPLA), Lactic acid bacteria Málaga (INIA), Lactic acid bacteria Cádiz (INIA) |
|
MicroHealth, MicroHealth, Tecnología de Productos Lácteos y Cárnicos (Dpto. Tecnología de Alimentos) |
| Plants |
Microbial communities linked to plants, including rhizosphere, phyllosphere, and endosphere environments |
Fungal Microbiome of Festuca rubra subsp. pruinosa, Fungal Microbiome of Celtica gigantea |
Fungal Microbiome of Plants |
Plant Microbiome Collection |
| Animal |
Microbiomes inhabiting animals, including external surfaces and internal organs |
Tick Metataxonomies (5 pooled samples), Tick metataxonomies, Didemnum vexillum microbiome - global survey (CEAB), Styela plicata microbiome - multidimensional variability (CEAB), Styela plicata microbiome - spatio-temporal dynamics (CEAB), Didemnum vexillum microbiome - global survey ZOTUs (CEAB) |
|
SabiO-Microbioomics Lab, Molecular ecology of marine benthos |
