Detalles de Styela plicata microbiome - spatio-temporal dynamics (CEAB)
| Notes | 5 adults × 8 timepoints (Jan/Apr/Jul/Oct 2020–2021) × 2 compartments (gill, tunic) × 2 harbours ≈ 160 ascidian + ≈ 28 seawater samples. 2 tunic samples failed QC (BLA245, VIL206). All sequences co-analysed with PRJNA982737 (Galià -Camps et al. 2023) but deposited separately. |
|---|---|
| IsolatesCount | 0 |
| Initial date | 15/1/20 |
| Culture | False |
| Omic data | True |
| OmicsCount | 188 |
| Accesion ID | PRJNA1030313 |
| Final date | 28/10/21 |
| Object of study | Spatio-temporal dynamics of Styela plicata microbiome (gill, tunic, seawater) sampled quarterly Jan 2020–Oct 2021 in two NW Mediterranean harbours; seasonal patterns, harbour differences and trace element correlations |
| Nº of samples | 188 |
| Specific source | Styela plicata (solitary tunicate), gill and tunic from adults; harbours of Blanes (41.6739°N 2.7987°E) and Vilanova i la Geltrú (41.2144°N 1.7354°E), NW Mediterranean + surface seawater (4 samples per timepoint) |
| Repository | NCBI |
| Omic specifics | V4 region, primers F515/R806 (Caporaso et al. 2011); Illumina NovaSeq 6000; 250bp PAIRED-end; FLASH → fastp → UCHIME → DADA2; 12,338 ASVs seawater / 22,203 tunic / 16,685 gill; SILVA-v138.1; sequenced Novogene Co. Ltd. (Cambridge) |
| Publications (DOI) | 10.1016/j.marpolbul.2024.116477 |
| Collections responsible | Xavier Turon |
Acciones
EstadÃsticas rápidas
Biomas
1
Grupos
1
Proyectos
0
Muestras aisladas
0
Datos ómicos
188