Detalles de Didemnum vexillum microbiome - global survey (CEAB)
| Notes | 70 tunic D. vexillum clade A + 5 D. vexillum clade B (Sugashima) + 5 Didemnum sp. (Roscoff) + 3 seawater controls (Ebro Delta). ZOTU table (4,323 ZOTUs) in supplementary. Exact collection dates not in SRA (2015-2016). Temperature metadata (Tmax/Tmin/Tmean/Trange) per locality available. |
|---|---|
| IsolatesCount | 0 |
| Initial date | 1/1/15 |
| Culture | False |
| Omic data | True |
| OmicsCount | 120 |
| Accesion ID | PRJNA608680 |
| Final date | 31/12/16 |
| Object of study | Global microbiome survey of the invasive tunicate Didemnum vexillum across 13 localities and two mitochondrial clades (A and B); comparison of microbiome structure across geographic regions and genetic groups |
| Nº of samples | 120 |
| Specific source | Didemnum vexillum (colonial tunicate), tunic tissue from 13 localities in 7 countries (Japan, USA, France, UK, Italy, Spain, New Zealand) + 3 seawater controls from Ebro Delta (Spain) |
| Repository | NCBI |
| Omic specifics | V4 region, primers F515/R806 (Caporaso et al. 2011); Illumina MiSeq; SINGLE-end 500bp (2×250bp merged); USEARCH/VSEARCH; ZOTUs 100% identity; SILVA_132_SSURef_NR99 |
| Publications (DOI) | 10.3389/fmars.2020.00201 |
| Collections responsible | Xavier Turon |
Acciones
Estadísticas rápidas
Biomas
1
Grupos
1
Proyectos
0
Muestras aisladas
0
Datos ómicos
120